13 research outputs found
Cell-Selective Metabolic Glycan Labeling Based on Ligand-Targeted Liposomes
A cell-specific metabolic glycan labeling strategy has
been developed using azidosugars encapsulated in ligand-targeted liposomes.
The ligands are designed to bind specific cell-surface receptors that
are only expressed or up-regulated in target cells, which mediates
the intracellular delivery of azidosugars. The delivered azidosugars
are metabolically incorporated into cell-surface glycans, which are
then imaged via a bioorthogonal reaction
Gene networks of differentially expressed genes involved in significant pathways.
<p>The gene networks comprised of the differentially expressed genes involved in significant pathways of (A) A/J mice infected with SS2 and (B) B6 mice infected with SS2 are shown. Legend: each circle represents a gene; red, upregulation; blue, downregulation; line segment, interaction of genes; arrow, activation (a), flat-ended arrow, inhibition (inh); straight, binding (b); dashed line, indirect effect (ind); P, phosphorylation; dp, dephosphorylation; ex, expression; u, ubiquitination.</p
Confirmation of BeadChips results by qRT-PCR.
<p>Confirmation of BeadChips results by qRT-PCR.</p
The process of treatment of four groups of data for GO, pathway and gene network analysis.
<p>(a) The differentially expressed genes between control A/J and control B6 mice were eliminated from those between SS2-infected A/J and SS2-infected B6 mice. (b) The remain of differential genes between SS2-infected A/J and SS2-infected B6 were intersected with differentially expressed genes between SS2-infected A/J and control A/J mice. (c) The remaining set of differentially expressed genes were analyzed for inclusion in GO categories and pathways. The same process was carried out with the differentially expressed genes between SS2-infected B6 and control B6 mice.</p
KEGG pathway analysis for significantly differentially expressed genes (A) between SS2-infected A/J and control A/J mice and (B) between SS2-infected B6 and control B6 mice.
<p><i>P</i> value<0.05 and FDR<0.05 were used as thresholds to select significant KEGG pathways. LgP is the base 10 logarithm of the <i>P</i> value.</p
Comparative analysis of gene expression in peritoneal macrophages.
<p>Expression levels of <i>Tlr2</i>, <i>Tnf</i>, <i>Ptx3</i> and <i>Mmp9</i> in A/J and B6 mice were measured by qRT-PCR and normalized to the housekeeping gene <i>GAPDH</i>. Differences between A/J and B6 mice were statistically significant with a <i>P</i> value of <0.05 as determined by one-way ANOVA, except with the <i>Tlr2</i> gene.</p
GO categories of biological processes for significantly differentially expressed genes.
<p>(A) between SS2-infected A/J and control A/J mice and (B) between SS2-infected B6 and control B6 mice. <i>P</i> value<0.05 and FDR<0.05 were used as thresholds to select significant GO categories.</p
Primers for selected genes analyzed using qRT-PCR.
<p>Primers for selected genes analyzed using qRT-PCR.</p
Glycan Imaging in Intact Rat Hearts and Glycoproteomic Analysis Reveal the Upregulation of Sialylation during Cardiac Hypertrophy
In
the heart, glycosylation is involved in a variety of physiological
and pathological processes. Cardiac glycosylation is dynamically regulated,
which remains challenging to monitor <i>in vivo</i>. Here
we describe a chemical approach for analyzing the dynamic cardiac
glycome by metabolically labeling the cardiac glycans with azidosugars
in living rats. The azides, serving as a chemical reporter, are chemoselectively
conjugated with fluorophores using copper-free click chemistry for
glycan imaging; derivatizing azides with affinity tags allows enrichment
and proteomic identification of glycosylated cardiac proteins. We
demonstrated this methodology by visualization of the cardiac sialylated
glycans in intact hearts and identification of more than 200 cardiac
proteins modified with sialic acids. We further applied this methodology
to investigate the sialylation in hypertrophic hearts. The imaging
results revealed an increase of sialic acid biosynthesis upon the
induction of cardiac hypertrophy. Quantitative proteomic analysis
identified multiple sialylated proteins including neural cell adhesion
molecule 1, T-kininogens, and α<sub>2</sub>-macroglobulin that
were upregulated during hypertrophy. The methodology may be further
extended to other types of glycosylation, as exemplified by the mucin-type
O-linked glycosylation. Our results highlight the applications of
metabolic glycan labeling coupled with bioorthogonal chemistry in
probing the biosynthesis and function of cardiac glycome during pathophysiological
responses