Additional file 1: of Complex signatures of genomic variation of two non-model marine species in a homogeneous environment

Tables S1 – S5 and Figure S1 – S4 as referred to in the text. (DOCX 1086 kb

Additional file 1: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Species list and ezRAD library information. (XLSX 52 kb

Additional file 5: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Tracer statistics of turnover, diversification and sampling proportion of the two runs and the prior from BEAST analysis 2. (PNG 138 kb

Additional file 6: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

BEAST analysis 2 output log file. (LOG 106 kb

Additional file 7: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Histograms showing the distribution of selected nodes from BEAST analyses 1 and 2. (PNG 327 kb

Additional file 8: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Mitochondrial genome structure with genome size, gene annotations, GC-content in blue and AT-content in green. (PNG 327 kb

Additional file 9: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Time calibrated phylogeny of BEAST analysis 1 plotted on stratigraphic chart. New sequenced species are in dark green and bold. Taxonomic clades of interest are shaded in light gray. Error bars on node ages are in dark turquoise. Nodes of interest are marked with a capital letters A-F on the nodes and correspond to node ages listed in Table 1. The capital letter R specifies the root age of the dated phylogeny. (PNG 913 kb

Additional file 3: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

XML BEAST file including data matrix and parameter setup as described in Materials and Methods. (XML 291 kb