Dynamic hydration valve controlled ion permeability and stability of NaK channel

The K^+^, Na^+^, Ca^2+^ channels are essential to neural signalling, but our current knowledge at atomic level is mainly limited to that of K^+^ channels. Unlike a K^+^ channel having four equivalent K^+^-binding sites in its selectivity filter, a NaK channel conducting both Na^+^ and K^+^ ions has a vestibule in the middle part of its selectivity filter, in which ions can diffuse but not bind specifically. However, how the NaK channel conducts ions remains elusive. Here we find four water grottos connecting with the vestibule of the NaK selectivity filter. Molecular dynamics and free energy calculations show that water molecules moving in the vestibule-grotto complex hydrate and stabilize ions in the filter and serve as a valve in conveying ions through the vestibule for controllable ion permeating. During ion conducting, the water molecules are confined within the valve to guarantee structure stability. The efficient exquisite hydration valve should exist and play similar roles in the large family of cyclic nucleotide-gated channels which have similar selectivity filter sequences. The exquisite hydration valve mechanism may shed new light on the importance of water in neural signalling

Entropy for gravitational Chern-Simons terms by squashed cone method

In this paper we investigate the entropy of gravitational Chern-Simons terms for the horizon with non-vanishing extrinsic curvatures, or the holographic entanglement entropy for arbitrary entangling surface. In 3D we find no anomaly of entropy appears. But the squashed cone method can not be used directly to get the correct result. For higher dimensions the anomaly of entropy would appear, still, we can not use the squashed cone method directly. That is becasuse the Chern-Simons action is not gauge invariant. To get a reasonable result we suggest two methods. One is by adding a boundary term to recover the gauge invariance. This boundary term can be derived from the variation of the Chern-Simons action. The other one is by using the Chern-Simons relation $d\bm{\Omega_{4n-1}}=tr(\bm{R}^{2n})$. We notice that the entropy of $tr(\bm{R}^{2n})$ is a total derivative locally, i.e. $S=d s_{CS}$. We propose to identify $s_{CS}$ with the entropy of gravitational Chern-Simons terms $\Omega_{4n-1}$. In the first method we could get the correct result for Wald entropy in arbitrary dimension. In the second approach, in addition to Wald entropy, we can also obtain the anomaly of entropy with non-zero extrinsic curvatures. Our results imply that the entropy of a topological invariant, such as the Pontryagin term $tr(\bm{R}^{2n})$ and the Euler density, is a topological invariant on the entangling surface.Comment: 19 pag

Influence of Coulomb interaction on the anisotropic Dirac cone in graphene

Anisotropic Dirac cones can appear in a number of correlated electron systems, such as cuprate superconductors and deformed graphene. We study the influence of long-range Coulomb interaction on the physical properties of an anisotropic graphene by using the renormalization group method and 1/N expansion, where N is the flavor of Dirac fermions. Our explicit calculations reveal that the anisotropic fermion velocities flow monotonously to an isotropic fixed point in the lowest energy limit in clean graphene. We then incorporate three sorts of disorders, including random chemical potential, random gauge potential, and random mass, and show that the interplay of Coulomb interaction and disorders can lead to rich and unusual behaviors. In the presence of strong Coulomb interaction and a random chemical potential, the fermion velocities are driven to vanish at low energies and the system turns out to be an exotic anisotropic insulator. In the presence of Coulomb interaction and other two types of disorders, the system flows to an isotropic low-energy fixed point more rapidly than the clean case, and exhibits non-Fermi liquid behaviors. We also investigate the nonperturbative effects of Coulomb interaction, focusing on how the dynamical gap is affected by the velocity anisotropy. It is found that the dynamical gap is enhanced (suppressed) as the fermion velocities decrease (increase), but is suppressed as the velocity anisotropy increases.Comment: 24 pages, 17 figure

Holographic Entanglement Entropy for the Most General Higher Derivative Gravity

The holographic entanglement entropy for the most general higher derivative gravity is investigated. We find a new type of Wald entropy, which appears on entangling surface without the rotational symmetry and reduces to usual Wald entropy on Killing horizon. Furthermore, we obtain a formal formula of HEE for the most general higher derivative gravity and work it out exactly for some squashed cones. As an important application, we derive HEE for gravitational action with one derivative of the curvature when the extrinsic curvature vanishes. We also study some toy models with non-zero extrinsic curvature. We prove that our formula yields the correct universal term of entanglement entropy for 4d CFTs. Furthermore, we solve the puzzle raised by Hung, Myers and Smolkin that the logarithmic term of entanglement entropy derived from Weyl anomaly of CFTs does not match the holographic result even if the extrinsic curvature vanishes. We find that such mismatch comes from the `anomaly of entropy' of the derivative of curvature. After considering such contributions carefully, we resolve the puzzle successfully. In general, we need to fix the splitting problem for the conical metrics in order to derive the holographic entanglement entropy. We find that, at least for Einstein gravity, the splitting problem can be fixed by using equations of motion. How to derive the splittings for higher derivative gravity is a non-trivial and open question. For simplicity, we ignore the splitting problem in this paper and find that it does not affect our main results.Comment: 28 pages, no figures, published in JHE