Approaches to understanding the ecology and evolution of understudied terrestrial archaeal ammonia-oxidisers

Funded by The Royal SocietyPeer reviewedPostprintPostprin

Selective inhibition of ammonia oxidising archaea by simvastatin stimulates growth of ammonia oxidising bacteria

Acknowledgements The authors would like to thank Dr Robin Walker for access to the experimental plots at the SRUC, Craibstone Estate, Aberdeen. JZ was funded by a Natural Environment Research Council (NERC) grant (NE/K016342/1), MOB by a University of Aberdeen Elphinstone Scholarship and by TETFund through Adekunle Ajasin University Akungba (AAUA) Nigeria, YM by a NERC grant (NE/R001529/1) and CGR by a Royal Society University Research Fellowship (URF150571).Peer reviewedPublisher PD

Preferential temperature and ammonia concentration for in-situ growth of Candidatus Nіtrоѕосоѕmісuѕ ammonia oxidising archaea

MOB was supported by a University of Aberdeen Elphinstone Scholarship and by TETFund through Adekunle Ajasin University Akungba (AAUA) Nigeria. CGR was funded by a Royal Society University Research Fellowship (UF150571).Peer reviewedPostprin

Revisiting plant biological nitrification inhibition efficiency using multiple archaeal and bacterial ammonia-oxidising cultures

Open Access via the Springer Compact Agreement Funding Information: JKB is funded by a University of Aberdeen PhD studentship, and CGR is funded by a Royal Society University Research Fellowship (URF150571).Peer reviewedPublisher PD

Characterisation of microbial communities of drill cuttings piles from offshore oil and gas installations

Acknowledgements The authors would like to acknowledge the support of the Maxwell computer cluster funded by the University of Aberdeen. Dr. Axel Aigle is acknowledged for guidance and assistance in molecular analysis. Hedda Weitz and Heather Richmond are thanked for technical support. This work was supported by the Natural Environment Research Council [NE/L00982X/1 to UW, JA and EG]. CGR was supported by a University Research Fellowship from the Royal Society [UF150571]. DC samples, environmental analysis and all geochemical datasets were kindly provided by Marathon Oil UK LLC (referred to as Marathon Oil).Peer reviewedPublisher PD

The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions

The authors are members of the Nitrous Oxide Research Alliance (NORA), a Marie Skłodowska-Curie ITN and research project under the EU's seventh framework program (FP7). GN is funded by the AXA Research Fund and CGR by a Royal Society University Research Fellowship (UF150571) and a Natural Environment Research Council (NERC) Standard Grant (NE/K016342/1). The authors would like to thank Dr Robin Walker and the SRUC Craibstone Estate (Aberdeen) for access to the agricultural plots, Dr Alex Douglas for statistical advice and Philipp Schleusner for assisting microcosm construction and sampling.Peer reviewedPublisher PD

Gene duplication drives genome expansion in a major lineage of Thaumarchaeota

Acknowledgements This work and P.O.S. were financially supported by UKRI through the NERC grant NE/R001529/1. In addition, C.G.-R. and T.A.W. were both supported by a Royal Society University Research Fellowship (URF150571 and UF140626). C.Q. was funded through an MRC fellowship (MR/M50161X/1) as part of the CLoud Infrastructure for Microbial Genomics (CLIMB) consortium (MR/L015080/1). S.R. was funded through the BBSRC grant BB/R015171/1. The Thames Metagenome Database was funded through the NERC grants NE/M011674/1, NE/M011259/1 and NE/M01133X/1. We thank Dr Tony Travis for his support with Biolinux and acknowledge Prof Jim Prosser for his critical reading of the manuscript. The authors would also like to acknowledge the support of the Maxwell computer cluster funded by the University of Aberdeen.Peer reviewedPublisher PD

Long-Term Adaptation of Acidophilic Archaeal Ammonia Oxidisers Following Different Soil Fertilisation Histories

Acknowledgements We thank Prof Yuanqiu He (now deceased) at the State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences for his contribution to this study. In addition, we thank the staff of the Analysis Center at the Institute of Soil Science for technical support, including Ms Rong Huang and Mr Zuohao Ma for 454-pyrosequencing, Mr Ruhai Wang for the ammonia and nitrate and nitrite content assays, Mr Guoxing Lu for the SOM assay. We also thank Dr Jian Cui and Dr Xiaoli Liu for assistance in soil sampling in the fields. Funding This work was supported by the National Natural Science Foundation of China (41530857, 91751204 and 41977056). JZ was funded by a Natural Environment Research Council grant (NE/K016342/1) and CGR was supported by a Royal Society University Research Fellowship (URF150571).Peer reviewedPublisher PD

Bacterial Community Response in Deep Faroe-Shetland Channel Sediments Following Hydrocarbon Entrainment With and Without Dispersant Addition

The authors acknowledge Dr. Alan McCue for assistance with GC-FID, the MRV Scotia scientists and crew for assistance with sample collection and Cruikshank Analytical Lab for Carbon content analysis. Amy Bode and Val Johnston are thanked for their assistance with experimental setup and sampling. Dr. Sophie Shaw (CGEBM) is acknowledged for her advice and guidance with molecular analysis. Funding LJP and hydrocarbon analytics were funded through MarCRF funds for a Ph.D. project designed by UW, JA, and AG and awarded to LJP. LDP and microbiological investigations were funded through NERC award no NE/L00982X/1 to UW, JA, and EG. CG-R is funded by a University Research Fellowship.Peer reviewedPublisher PD

Grazing weakens competitive interactions between active methanotrophs and nitrifiers modulating greenhouse-gas emissions in grassland soils

This work was financially supported by Natural Science Foundation of China (41977033, 41907026, and 41721001), Fundamental Research Funds for the Central Universities (2019QNA6011), National Key Basic Research Program of China (2014CB138801), Shandong Provincial Natural Science Foundation (ZR2019BD032), China Postdoctoral Science Foundation (2020T130387 and 2019M652448). CG-R was funded by a Royal Society University Research Fellowship (UF150571). Special thanks to ChunMei Meng, Yu Luo, and Yan Zheng for their assistance in laboratory analyses.Peer reviewedPublisher PD