22 research outputs found

    Seasonal variation in environmental DNA detection in sediment and water samples

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    The use of aquatic environmental DNA (eDNA) to detect the presence of species depends on the seasonal activity of the species in the sampled habitat. eDNA may persist in sediments for longer than it does in water, and analysing sediment could potentially extend the seasonal window for species assessment. Using the great crested newt as a model, we compare how detection probability changes across the seasons in eDNA samples collected from both pond water and pond sediments. Detection of both aquatic and sedimentary eDNA varied through the year, peaking in the summer (July), with its lowest point in the winter (January): in all seasons, detection probability of eDNA from water exceeded that from sediment. Detection probability of eDNA also varied between study areas, and according to great crested newt habitat suitability and sediment type. As aquatic and sedimentary eDNA show the same seasonal fluctuations, the patterns observed in both sample types likely reflect current or recent presence of the target species. However, given the low detection probabilities found in the autumn and winter we would not recommend using either aquatic or sedimentary eDNA for year-round sampling without further refinement and testing of the methods

    Aqueous interfacial gels assembled from small molecule supramolecular polymers

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    The self-assembly of a stimuli-responsive aqueous supramolecular hyperbranched polymer from small molecules is reported. This system is composed of ditopic and tritopic guest-functionalised molecules that are able to form heteroternary supramolecular complexes with the macrocyclic host cucurbit[8]uril (CB[8]). We demonstrate that the supramolecular hyperbranched polymer formed is responsive to both photo- and chemical stimuli, exhibiting reversibility. Furthermore, this system is shown to assemble at liquid–liquid interfaces, which upon gelation, is observable on the micrometre scale. This self-healing supramolecular network can act as a soft matter barrier for aqueous microdroplets, inhibiting their coalescence

    Controlling Spatiotemporal Mechanics of Supramolecular Hydrogel Networks with Highly Branched Cucurbit[8]uril Polyrotaxanes

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    Attempts to rationally tune the macroscopic mechanical performance of supramolecular hydrogel networks through noncovalent molecular interactions have led to a wide variety of supramolecular materials with desirable functions. While the viscoelastic properties are dominated by temporal hierarchy (crosslinking kinetics), direct mechanistic studies on spatiotemporal control of supramolecular hydrogel networks, based on host-guest chemistry, have not yet been established. Here, supramolecular hydrogel networks assembled from highly branched cucurbit[8]uril-threaded polyrotaxanes (HBP-CB[8] ) and naphthyl-functionalized hydroxyethyl cellulose (HECNp) are reported, exploiting the CB[8] host-guest complexation. Mechanically locking CB[8] host molecules onto a highly branched hydrophilic polymer backbone, through selective binary complexation with viologen derivatives, dramatically increases the solubility of CB[8]. Additionally, the branched architecture enables tuning of material dynamics of the supramolecular hydrogel networks via both topological (spatial hierarchy) and kinetic (temporal hierarchy) control. Relationship between macroscopic properties (time- and temperature-dependent rheological properties, thermal stability, and reversibility), spatiotemporal hierarchy, and chain dynamics of the highly branched polyrotaxane hydrogel networks is investigated in detail. Such kind of tuning of material mechanics through spatiotemporal hierarchy improves our understanding of the challenging relationship between design of supramolecular polymeric materials and their complex viscoelasticity, and also highlights a facile strategy to engineer dynamic supramolecular materials

    Time-resolved ICP-MS measurement: A new method for elemental and multiparametric analysis of single cells

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    Time-resolved inductively coupled plasma mass spectrometry (ICP-MS) has attracted much attention for elemental and multiparametric analysis of single cells, instead of a classical bulk analysis of large amount of cells after a dissolution. In the time-resolved measurement, cells are directly introduced into the plasma via nebulizing or micro drop dispensing, and then ion plumes corresponding to single cells are individually detected with a high time resolution. The sensitivity and cell throughput in the measurement strongly depend on the time resolution. A high cell introduction efficiency into the plasma supports for a reduction of cell consumption. Biomolecules can also be measured through the attachment of elemental tags, and then the amount distribution of elements and biomolecules in single cells can be evaluated, while providing information concerning cell-to-cell variations. By applying ICP time-of-flight mass spectrometry (ICP-TOFMS), multiparametric analysis of elements and biomolecules can be achieved similar to that by a flow cytometer. This article highlights the technical aspects of the time-resolved ICP-MS measurement technique for elemental and multiparametric analysis of single cells. © 2014 The Japan Society For Analytical Chemistry

    Modified high performance concentric nebulizer for inductively coupled plasma optical emission spectrometry

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    The high performance triple-tube concentric nebulizer (HPCN) was modified and evaluated for sample introduction into inductively coupled plasma optical emission spectrometry (ICP-OES) at liquid flow rates of 0.25 to 0.8 mL min -1. The acceptable liquid flow rate for the use of HPCN was extended by replacing the tapered center capillary tube of the nebulizer (i.d./o.d.: 50 μm/150 μm) with a large bore tube (i.d./o.d.: 110 μm/170 μm). The nebulization efficiency was much improved by reducing the inner diameter of the nebulizer nozzle from 250 μm to 200 μm. At a liquid flow rate of 0.8 mL min -1 and a nebulizer gas flow rate of 1 L min -1, the Sauter mean diameter (D 3,2) of the primary aerosol generated by the modified HPCN was 3.4 μm, and over 90% (v/v) of the aerosol droplets were below 10 μm in diameter. The D 3,2 value was smaller than those generated by conventional nebulizers, Meinhard nebulizer type C (8.2 μm), Glass Expansion Conikal nebulizer (15.8 μm), SeaSpray (14.8 μm), and MiraMist (5.6 μm). The amount of the tertiary aerosol of the modified HPCN generated through a non-baffled cyclone chamber was approximately 1.8 to 3.1 times higher than those of the other nebulizers, with similar size distributions. The sensitivity in ICP-OES with the modified HPCN was 1.5- to 3.2-fold higher than those with the other nebulizers when the liquid flow rates were the same. The plasma robustness estimated from the commonly used ratio Mg(ii)/Mg(i) was the same or slightly better than that of the conventional nebulizers. The HPCN also showed a good tolerance to high total dissolved solids (TDS) using 20% NaCl solution. Validation of the modified HPCN was performed by a recovery test of spiked seawater and analyzing the NMIJ CRM 7502-a white rice flour. The observed values for the ten elements Na, Mg, P, K, Ca, Mn, Fe, Cu, Zn and Cd were in good agreement with their certified values. We concluded the modified HPCN is a very useful nebulizer for ICP-OES with good performance at a large range of sample flow rates. © 2012 The Royal Society of Chemistry

    Separation and quantification of RNA molecules using size-exclusion chromatography hyphenated with inductively coupled plasma-mass spectrometry

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    The hyphenation of SEC with ICP-MS was successfully applied to RNA quantification. The developed method combines the separation technique for large biomolecules and element selective detection of ICP-MS. The separation of RNA molecules was performed under the SEC condition without additive reagents such as salts to prevent the adhesion of RNA molecules on the column resin. Fragments of RNA, which were commercially available as a ladder marker solution and certified reference materials, were successfully separated and analyzed by measuring 31P+ with this method. RNA was quantified with good repeatability (RSD of peak area; 2.7%, n = 3) and linearity (R2 = 0.999) using a P standard solution as a calibrant. LOD and absolute detection limit of RNA were 6.7 μg/kg and 67 pg, respectively, which were equal to the values obtained by the analysis of a P standard solution. The accuracy of the proposed measurement was evaluated by measuring certified reference materials of RNA solutions for quantitative analysis (NMIJ CRM 6204-a). The results obtained by this method agreed with the certified values within uncertainty. The proposed analysis method, which demonstrates good accuracy and high precision and is free from interference by nucleotide analogues, qualifies as a method of quality control for the RNA synthesis and extraction process. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

    Highly efficient single-cell analysis of microbial cells by time-resolved inductively coupled plasma mass spectrometry

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    To realise highly efficient single-cell analysis of microbial cells by time-resolved inductively coupled plasma mass spectrometry (ICP-MS), we developed a modified high efficiency cell introduction system (HECIS), consisting of a large-bore high performance concentric nebulizer (LB-HPCN) with a centre capillary tube of 150 μm inner diameter and a custom-made small-volume (15 cm3) on-axis spray chamber that uses a sheath gas flow near the chamber exit to suppress cell deposition. We also assembled an external ion pulse counting unit to directly read the ion pulse current from the electron multiplier of the ICP-MS via a function generator with no dead time, in order to obtain data with sufficiently high time resolution (i.e., 0.05-1 ms). As compared to a conventional ICP-MS working at its minimum integration time (10 ms), this assembly led to more than ca. 13-fold higher signal-to-background ratios for 31P, and made higher throughput of cells to the plasma more feasible. By using the modified HECIS and the external ion pulse counting unit for determination of the cell introduction efficiencies of different-sized unicellular microbes, including yeast (Saccharomyces cerevisiae), cyanobacterium (Synechocystis sp. PCC 6803), red algae (Cyanidioschyzon merolae 10D and Galdieria sulphuraria), and green alga (Chlamydomonas reinhardtii CC-125), it was revealed that their cell introduction efficiencies ranged from 86% (for C. reinhardtii CC-125 with a mean cell diameter of 6.4 μm) to ca. 100% (for other microbes with mean cell diameters of 2.0-3.0 μm), implying that by use of the ICP-MS system, the cell introduction efficiencies are able to reach approximately 100% and tend to decrease with increasing cell sizes (at least more than 3.1 μm in mean diameter). A wide range of biologically important elements, such as C, Mg, Al, P, S, K, Ca, Cr, Mn, Fe, and Zn, were tested for reasonable detection using the ICP-MS system. Results likely corresponding to separate cell events were obtained for some elements present in each microbe. This journal is © the Partner Organisations 2014

    A novel concentric grid nebulizer for inductively coupled plasma optical emission spectrometry

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    A novel concentric type grid nebulizer (CGrid) was developed for sample introduction into an inductively coupled plasma optical emission spectrometer (ICP-OES). The CGrid has a concentric structure and a grid screen (over 350 meshes per inch) that is set inside the nozzle. The grid screen acts as both an effective gas-liquid mixing filter and a gas flow damper, and then the liquid breaks up into small droplets by passing through the grid with low velocity. By this unique nebulizing process, the CGrid showed excellent nebulizer performances on comparing with commercially available nebulizers, such as Meinhard nebulizer type C (MHN), modified high performance concentric nebulizer (m-HPCN), and OneNeb. The primary aerosols generated with the CGrid were finer and their velocities were lower than those with the other nebulizers. This nebulization feature gave a high transport efficiency of aerosols into the plasma, resulting in high sensitivity in ICP-OES. In the range of the liquid flow rate of 0.25 mL min-1 to 2.0 mL min-1 with the optimized nebulizer gas flow rate for obtaining the highest Mg(ii)/Mg(i) signal intensity ratio, the maximum loading amount of aerosols into the plasma obtained with the CGrid was higher than those with the MHN (2.1-fold) and m-HPCN (1.4-fold), and almost the same as that with the OneNeb. The maximum sensitivity in ICP-OES obtained with the CGrid was 1.8- to 3.7-fold, 1.5- to 1.9-fold, and 1.1- to 1.2-fold higher than those with the MHN, m-HPCN, and OneNeb, respectively. The CGrid also showed a good tolerance for high total dissolved solid (TDS) concentrations. No clogging was observed when saturated NaCl solution was continuously nebulized for 5 hours. The limits of detection (LODs) obtained with the CGrid were better than those of the MHN, 1.6- to 5.3-fold improved, except for Cd I 228.802 nm, and similar to those of the m-HPCN and OneNeb. The plasma robustness estimated from the Mg(ii)/Mg(i) signal intensity ratio obtained with the CGrid (10.6) was also better than those of the MHN (9.6), and similar to those of the m-HPCN (10.2) and OneNeb (10.4). The short-term stability on measuring spiked seawater (45 min) was within 3% of the relative standard deviation, and the recoveries of the spiked elements were in the range of 99% to 106%. The validation of the CGrid was performed by analyzing the NMIJ CRM 7531-a brown rice flour. The observed values for the five elements Mn, Fe, Cu, Zn, and Cd were in good agreement with their certified values. It was concluded that the CGrid is very useful for ICP-OES with good performance on sensitivity and high TDS solution analysis
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