Isolation of chromium resistant bacteria from a former bauxite mine area and their capacity for Cr (VI) reduction

The Cr (VI) reducing capacity of bacteria has been investigated in many different soils and waters but little or no information is available from soils originating from bauxite mine areas. From soil, mud and rhizospheres of the floating aquatic plant Potamogeton natans L. and the terrestrial plant Carduus acanthoides L., the Cr content was determined and the microbial populations were sampled. The highest total chromium concentration (204.6 mgkg-1) was found in the rhizosphere of C. acanthoides. To determine the numbers and percentages of chromate-resistant bacteria, the autochthonous microbial populations were subjected to different Cr (VI) concentrations (40, 100, 300 and 1000 mM as K2Cr2O7). At 1000 mM Cr (VI) in the medium, about 25% of bacteria from soil and 45% of bacteria from the rhizospheres were resistant. Of 34 bacterial isolates, within 24 h, only Bacillus stearothermophilus 12 ms, Pseudomonas sp. 12 bk3 and Serratia fonticola 7 be were able to reduce 50 μM Cr (VI). Using prolonged 72 h incubation, they were able to reduce 500 μM Cr (VI) concentrations added to the medium. These chromate-resistant bacteria isolated from rhizosphere of plants growing in bauxite mine soil have great potential for bioremediation of Cr (VI)-polluted wastes.Key words: Chromate-resistant bacteria, chromate reduction, bauxite mine, rhizosphere, plant

Reph, a Regulator of Eph Receptor Expression in the Drosophila melanogaster Optic Lobe

Receptors of the Eph family of tyrosine kinases and their Ephrin ligands are involved in developmental processes as diverse as angiogenesis, axon guidance and cell migration. However, our understanding of the Eph signaling pathway is incomplete, and could benefit from an analysis by genetic methods. To this end, we performed a genetic modifier screen for mutations that affect Eph signaling in Drosophila melanogaster. Several dozen loci were identified on the basis of their suppression or enhancement of an eye defect induced by the ectopic expression of Ephrin during development; many of these mutant loci were found to disrupt visual system development. One modifier locus, reph (regulator of eph expression), was characterized in molecular detail and found to encode a putative nuclear protein that interacts genetically with Eph signaling pathway mutations. Reph is an autonomous regulator of Eph receptor expression, required for the graded expression of Eph protein and the establishment of an optic lobe axonal topographic map. These results reveal a novel component of the regulatory pathway controlling expression of eph and identify reph as a novel factor in the developing visual system

FLP Recombinase-Mediated Site-Specific Recombination in Silkworm, Bombyx mori

A comprehensive understanding of gene function and the production of site-specific genetically modified mutants are two major goals of genetic engineering in the post-genomic era. Although site-specific recombination systems have been powerful tools for genome manipulation of many organisms, they have not yet been established for use in the manipulation of the silkworm Bombyx mori genome. In this study, we achieved site-specific excision of a target gene at predefined chromosomal sites in the silkworm using a FLP/FRT site-specific recombination system. We first constructed two stable transgenic target silkworm strains that both contain a single copy of the transgene construct comprising a target gene expression cassette flanked by FRT sites. Using pre-blastoderm microinjection of a FLP recombinase helper expression vector, 32 G3 site-specific recombinant transgenic individuals were isolated from five of 143 broods. The average frequency of FLP recombinase-mediated site-specific excision in the two target strains genome was approximately 3.5%. This study shows that it is feasible to achieve site-specific recombination in silkworms using the FLP/FRT system. We conclude that the FLP/FRT system is a useful tool for genome manipulation in the silkworm. Furthermore, this is the first reported use of the FLP/FRT system for the genetic manipulation of a lepidopteran genome and thus provides a useful reference for the establishment of genome manipulation technologies in other lepidopteran species

Recombinase technology: applications and possibilities

The use of recombinases for genomic engineering is no longer a new technology. In fact, this technology has entered its third decade since the initial discovery that recombinases function in heterologous systems (Sauer in Mol Cell Biol 7(6):2087–2096, 1987). The random insertion of a transgene into a plant genome by traditional methods generates unpredictable expression patterns. This feature of transgenesis makes screening for functional lines with predictable expression labor intensive and time consuming. Furthermore, an antibiotic resistance gene is often left in the final product and the potential escape of such resistance markers into the environment and their potential consumption raises consumer concern. The use of site-specific recombination technology in plant genome manipulation has been demonstrated to effectively resolve complex transgene insertions to single copy, remove unwanted DNA, and precisely insert DNA into known genomic target sites. Recombinases have also been demonstrated capable of site-specific recombination within non-nuclear targets, such as the plastid genome of tobacco. Here, we review multiple uses of site-specific recombination and their application toward plant genomic engineering. We also provide alternative strategies for the combined use of multiple site-specific recombinase systems for genome engineering to precisely insert transgenes into a pre-determined locus, and removal of unwanted selectable marker genes

The Drosophila melanogaster host model

The deleterious and sometimes fatal outcomes of bacterial infectious diseases are the net result of the interactions between the pathogen and the host, and the genetically tractable fruit fly, Drosophila melanogaster, has emerged as a valuable tool for modeling the pathogen–host interactions of a wide variety of bacteria. These studies have revealed that there is a remarkable conservation of bacterial pathogenesis and host defence mechanisms between higher host organisms and Drosophila. This review presents an in-depth discussion of the Drosophila immune response, the Drosophila killing model, and the use of the model to examine bacterial–host interactions. The recent introduction of the Drosophila model into the oral microbiology field is discussed, specifically the use of the model to examine Porphyromonas gingivalis–host interactions, and finally the potential uses of this powerful model system to further elucidate oral bacterial-host interactions are addressed

The Filter-Combiner Model for Memoryless Synchronous Stream Ciphers

Abstract. We introduce a new model – the Filter-Combiner model – for memoryless synchronous stream ciphers. The new model combines the best features of the classical models for memoryless synchronous stream ciphers – the Nonlinear-Combiner model and the Nonlinear-Filter model. In particular, we show that the Filter-Combiner model provides key length optimal resistance to correlation attacks and eliminates weaknesses of the NF model such as the the Anderson leakage and the Inversion Attacks. Further, practical length sequences extracted from the Filter-Combiner model cannot be distinguished from true random sequences based on linear complexity test. We show how to realise the Filter-Combiner model using Boolean functions and cellular automata. In the process we point out an important security advantage of sequences obtained from cellular automata over sequences obtained from LFSRs