Additional file 2: Table S2. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia

Metadata and read counts per taxa for the 216 16S samples from Indonesia. (XLSX 1655 kb

Additional file 7: Figure S2. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia

Comparison of MiSeq and 454 sequencing platforms. (A) MiSeq identifies more unique bacterial taxa to the genus and family than 454. (B) Identified taxa are supported by more reads with MiSeq than with 454, improving statistical comparison power. (TIFF 334 kb

Additional file 3: Table S3. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia

Enrichment results, metadata and depths of coverage per genome for the 24 MS samples from Indonesia and Liberia. (XLSX 221 kb

Additional file 1: Table S1. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia

Metadata and read counts per taxa for the 98 16S samples from Liberia. (XLSX 595 kb

Additional file 6: Figure S1. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia

Metadata analysis for Indonesia and Liberia datasets. (A) Hierarchical All-against-All (HAIIA) significance testing for metadata. (B–E) Principal component analysis (PCA) plots based on relative taxa abundance for all taxa identified in three or more samples, among heavy-infected or non-infected samples, are shown for Indonesia, with color coding according to (B) comparison cohort and (C) village and sex metadata, and for Liberia, with color coding according to (D) infected vs uninfected samples and (E) village and sex metadata. No significant differential clustering was identified, according to PERMANOVA. (TIFF 429 kb