14 research outputs found
Reversible Switching of Electronic Ground State in a Pentacoordinated Cu(II) 1D Cationic Polymer and Structural Diversity
Two copper(II) polymeric complexes
{[Cu(HPymat)(MeOH)](NO<sub>3</sub>)}<sub><i>n</i></sub> (<b>1</b>) and {[Cu<sub>4</sub>(Pymab)<sub>4</sub>(H<sub>2</sub>O)<sub>4</sub>](NO<sub>3</sub>)<sub>4</sub>} (<b>2</b>) were synthesized with the carboxylate-containing Schiff-base ligands
HPymat<sup>–</sup> and Pymab<sup>–</sup> [H<sub>2</sub>Pymat = (<i>E</i>)-2-(1-(pyridin-2-yl)methyleneamino)terephthalic
acid, HPymab = (<i>E</i>)-2-((pyridine-2-yl)methyleneamino)benzoic
acid]. Complex <b>1</b> is a one-dimensional Cu(II) cationic
polymeric complex containing free protonated carboxylic groups and
nitrate anions as counterions. Complex <b>2</b> is a zero-dimensional
tetranuclear cationic Cu(II) complex containing nitrate anions as
counterions. Complex <b>1</b> shows rhombic electron paramagnetic
resonance (EPR) spectra in the solid state at room temperature (RT)
and 77 K and tetragonal EPR spectra in dimethyl sulfoxide (DMSO) and
dimethylformamide (DMF) and “inverse” EPR spectrum in
CH<sub>3</sub>CN. Complex <b>2</b> shows rhombic EPR spectra
in the solid state at RT and 77 K. But complex <b>2</b> shows
tetragonal spectra in DMSO, DMF, and CH<sub>3</sub>CN. Thermogravimetric
analysis was also performed for both complexes <b>1</b> and <b>2</b>. Mean-square displacement amplitude analysis was carried
out to detect librational disorder along the metal–ligand bonds
in crystal structures
Multiple and Variable Binding of Pharmacologically Active Bis(maltolato)oxidovanadium(IV) to Lysozyme
The interaction with
proteins of metal-based drugs plays a crucial
role in their transport, mechanism, and activity. For an active MLn complex, where L is the organic carrier,
various binding modes (covalent and non-covalent, single or multiple)
may occur and several metal moieties (M, ML, ML2, etc.)
may interact with proteins. In this study, we have evaluated the interaction
of [VIVO(malt)2] (bis(maltolato)oxidovanadium(IV)
or BMOV, where malt = maltolato, i.e., the common name for 3-hydroxy-2-methyl-4H-pyran-4-onato) with the model protein hen egg white lysozyme
(HEWL) by electrospray ionization mass spectrometry, electron paramagnetic
resonance, and X-ray crystallography. The multiple binding of different
V-containing isomers and enantiomers to different sites of HEWL is
observed. The data indicate both non-covalent binding of cis-[VO(malt)2(H2O)] and [VO(malt)(H2O)3]+ and covalent binding of [VO(H2O)3–4]2+ and cis-[VO(malt)2] and other V-containing fragments to the side chains of Glu35,
Asp48, Asn65, Asp87, and Asp119 and to the C-terminal carboxylate.
Our results suggest that the multiple and variable interactions of
potential VIVOL2 drugs with proteins can help
to better understand their solution chemistry and contribute to define
the molecular basis of the mechanism of action of these intriguing
molecules
Nonoxido V<sup>IV</sup> Complexes: Prediction of the EPR Spectrum and Electronic Structure of Simple Coordination Compounds and Amavadin
Density
functional theory (DFT) calculations of the <sup>51</sup>V hyperfine
coupling (HFC) tensor <b>A</b> have been completed for 20 “bare”
V<sup>IV</sup> complexes with different donor sets, electric charges,
and coordination geometries. Calculations were performed with ORCA
and Gaussian software, using functionals BP86, TPSS0, B1LYP, PBE0,
B3LYP, B3P, B3PW, O3LYP, BHandHLYP, BHandH, and B2PLYP. Among the
basis sets, 6-311g(d,p), 6-311++g(d,p), VTZ, cc-pVTZ, def2-TZVPP,
and the “core properties” CP(PPP) were tested. The experimental <i>A</i><sub>iso</sub> and <i>A</i><sub><i>i</i></sub> (where <i>i</i> = <i>x</i> or <i>z</i>, depending on the geometry and electronic structure of
V<sup>IV</sup> complex) were compared with the values calculated by
DFT methods. The results indicated that, based on the mean absolute
percentage deviation (MAPD), the best functional to predict <i>A</i><sub>iso</sub> or <i>A<sub>i</sub></i> is the
double hybrid B2PLYP. With this functional and the basis set VTZ,
it is possible to predict the <i>A</i><sub>iso</sub> and <i>A</i><sub><i>z</i></sub> of the EPR spectrum of amavadin
with deviations of −1.1% and −2.0% from the experimental
values. The results allowed us to divide the spectra of nonoxido V<sup>IV</sup> compounds in three typescalled “type 1”,
“type 2”, and “type 3”, characterized
by different composition of the singly occupied molecular orbital
(SOMO) and relationship between the values of <i>A</i><sub><i>x</i></sub>, <i>A</i><sub><i>y</i></sub>, and <i>A</i><sub><i>z</i></sub>. For
“type 1” spectra, <i>A</i><sub><i>z</i></sub> ≫ <i>A</i><sub><i>x</i></sub> ≈ <i>A</i><sub><i>y</i></sub> and <i>A</i><sub><i>z</i></sub> is in the range of (135–155) ×
10<sup>–4</sup> cm<sup>–1</sup>; for “type 2”
spectra, <i>A</i><sub><i>x</i></sub> ≈ <i>A</i><sub><i>y</i></sub> ≫ <i>A</i><sub><i>z</i></sub> and <i>A</i><sub><i>x</i></sub> ≈ <i>A</i><sub><i>y</i></sub> are in the range of (90–120) × 10<sup>–4</sup> cm<sup>–1</sup>; and for the intermediate spectra of “type
3”, <i>A</i><sub><i>z</i></sub> > <i>A</i><sub><i>y</i></sub> > <i>A</i><sub><i>x</i></sub> or <i>A</i><sub><i>x</i></sub> > <i>A</i><sub><i>y</i></sub> > <i>A</i><sub><i>z</i></sub>, with <i>A</i><sub><i>z</i></sub> or <i>A</i><sub><i>x</i></sub> values in the range of (120–135) × 10<sup>–4</sup> cm<sup>–1</sup>. The electronic structure of the V<sup>IV</sup> species was also discussed, and the results showed that the values
of <i>A</i><sub><i>x</i></sub> or <i>A</i><sub><i>z</i></sub> are correlated with the percent contribution
of V-d<sub><i>xy</i></sub> orbital in the SOMO. Similarly
to V<sup>IV</sup>O species, for amavadin the SOMO is based mainly
on the V-d<sub><i>xy</i></sub> orbital, and this accounts
for the large experimental value of <i>A</i><sub><i>z</i></sub> (153 × 10<sup>–4</sup> cm<sup>–1</sup>)
Formation of New Non-oxido Vanadium(IV) Species in Aqueous Solution and in the Solid State by Tridentate (O, N, O) Ligands and Rationalization of Their EPR Behavior
The systems formed by the V<sup>IV</sup>O<sup>2+</sup> ion with tridentate ligands provided with the (O,
N<sub>imine</sub>, O) donor set were described. The ligands studied
were 2,2′-dihydroxyazobenzene (Hdhab), α-(2-hydroxy-5-methylphenylimino)-<i>o</i>-cresol (Hhmpic), calmagite (H<sub>2</sub>calm), anthracene
chrome red A (H<sub>3</sub>anth), calcon (H<sub>2</sub>calc), and
calconcarboxylic acid (H<sub>3</sub>calc<sup>C</sup>). They can bind
vanadium with the two deprotonated phenol groups and the imine nitrogen
to give (5,6)-membered chelate rings. The systems were studied with
EPR, UV–vis and IR spectroscopy, pH-potentiometry, and DFT
methods. The ligands form unusual non-oxido V<sup>IV</sup> compounds
both in aqueous solution and in the solid state. [V(anthH<sub>–1</sub>)<sub>2</sub>]<sup>4–</sup> and [V(calmH<sub>–1</sub>)<sub>2</sub>]<sup>2–</sup> (formed in water at the physiological
pH) and [V(dhabH<sub>–1</sub>)<sub>2</sub>] and [V(hmpicH<sub>–1</sub>)<sub>2</sub>] (formed in the solid state in MeOH)
are hexa-coordinated with geometry intermediate between the octahedron
and the trigonal prism and an <i>unsymmetric facial</i> arrangement
of the two ligand molecules. DFT calculations were used to predict
the structure and <sup>51</sup>V hyperfine coupling tensor <b>A</b> of the non-oxido species. The EPR behavior of 13 non-oxido V<sup>IV</sup> species was put into relationship with the relevant geometrical
parameters and was rationalized in terms of the spin density on the
d<sub><i>xy</i></sub> orbital. Depending on the geometric
isomer formed (<i>meridional</i> or <i>facial</i>), d<sub><i>z</i><sup>2</sup></sub> mixes with the d<sub><i>xy</i></sub> orbital, and this effect causes the lowering
of the highest <sup>51</sup>V <i>A</i> value
V<sup>IV</sup>O Versus V<sup>IV</sup> Complex Formation by Tridentate (O, N<sub>arom</sub>, O) Ligands: Prediction of Geometry, EPR <sup>51</sup>V Hyperfine Coupling Constants, and UV–Vis Spectra
Systems formed using
the V<sup>IV</sup>O<sup>2+</sup> ion with tridentate ligands containing
a (O, N<sub>arom</sub>, O) donor set were described. Examined ligands
were 3,5-bis(2-hydroxyphenyl)-1-phenyl-1<i>H</i>-1,2,4-triazole
(H<sub>2</sub>hyph<sup>Ph</sup>), 4-[3,5-bis(2-hydroxyphenyl)-1<i>H</i>-1,2,4-triazol-1-yl]benzoic acid (H<sub>3</sub>hyph<sup>C</sup>), 4-[3,5-bis(2-hydroxyphenyl)-1<i>H</i>-1,2,4-triazol-1-yl]benzenesulfonic
acid (H<sub>3</sub>hyph<sup>S</sup>), and 2,6-bis(2-hydroxyphenyl)pyridine
(H<sub>2</sub>bhpp), with H<sub>3</sub>hyph<sup>C</sup> being an orally
active iron chelator that is commercially available under the name
Exjade (Novartis) for treatment of chronic iron overload arising from
blood transfusions. The systems were studied using EPR, UV–Vis,
and IR spectroscopies, pH potentiometry, and DFT methods. The ligands
bind vanadium with the two terminal deprotonated phenol groups and
the central aromatic nitrogen to give six-membered chelate rings.
In aqueous solution the main species were the mono- and bis-chelated
V<sup>IV</sup>O complexes, whereas in the solid state neutral non-oxido
V<sup>IV</sup> compounds were formed. [V(hyph<sup>Ph</sup>)<sub>2</sub>] and [V(bhpp)<sub>2</sub>] are hexacoordinated, with a geometry
close to the octahedral and a meridional arrangement of the ligands.
DFT calculations allow distinguishing V<sup>IV</sup>O and V<sup>IV</sup> species and predicting their structure, the <sup>51</sup>V hyperfine
coupling constant tensor <i><b>A</b></i>, and the
electronic absorption spectra. Finally, EPR spectra of several non-oxido
V<sup>IV</sup> species were compared using relevant geometrical parameters
to demonstrate that in the case of tridentate ligands the <sup>51</sup>V hyperfine coupling constant is related to the geometric isomerism
(meridional or facial) rather than the twist angle Φ, which
measures the distortion of the hexacoordinated structure toward a
trigonal prism
Metal vs Ligand Oxidation: Coexistence of Both Metal-Centered and Ligand-Centered Oxidized Species
A series of two-electron-oxidized cobalt porphyrin dimers
have
been synthesized upon controlled oxidations using halogens. Rather
unexpectedly, X-ray structures of two of these complexes contain two
structurally different low-spin molecules in the same asymmetric unit
of their unit cells: one is the metal-centered oxidized diamagnetic entity of the type CoIII(por), while the other one is
the ligand-centered oxidized paramagnetic entity
of the type CoII(por•+). Spectroscopic,
magnetic, and DFT investigations confirmed the coexistence of the
two very different electronic structures both in the solid and solution
phases and also revealed a ferromagnetic spin coupling between Co(II)
and porphyrin π-cation radicals and a weak antiferromagnetic
coupling between the π-cation radicals of two macrocycles via
the bridge in the paramagnetic complex
Decoding Surface Interaction of V<sup>IV</sup>O Metallodrug Candidates with Lysozyme
The
interaction of metallodrugs with proteins influences their transport,
uptake, and mechanism of action. In this study, we present an integrative
approach based on spectroscopic (EPR) and computational (docking)
tools to elucidate the noncovalent binding modes of various V<sup>IV</sup>O compounds with lysozyme, a prototypical model of protein
receptor. Five V<sup>IV</sup>O-flavonoid drug candidates formed by
quercetin (que), morin (mor), 7,8-dihydroxyflavone (7,8-dhf), chrysin
(chr), and 5-hydroxyflavone (5-hf)effective against several
osteosarcoma cell linesand two benchmark V<sup>IV</sup>O species
of acetylacetone (acac) and catechol (cat) are evaluated. The results
show a gradual variation of the EPR spectra at room temperature, which
is associated with the strength of the interaction between the square
pyramidal complexes [VOL<sub>2</sub>] and the surface residues of
lysozyme. The qualitative strength of the interaction from EPR is
[VO(que)<sub>2</sub>]<sup>2–</sup> ≈ [VO(mor)<sub>2</sub>] > [VO(7,8-dhf)<sub>2</sub>]<sup>2–</sup> > [VO(chr)<sub>2</sub>] ≈ [VO(5-hf)<sub>2</sub>] > [VO(acac)<sub>2</sub>] ≈ [VO(cat)<sub>2</sub>]<sup>2–</sup>. This observation
is compared with protein-<i>ligand</i> docking calculations
with GOLD software examining the GoldScore scoring function (<i>F</i>), for which hydrogen bond and van der Waals contact terms
have been optimized to account for the surface interaction. The best
predicted binding modes display an energy trend in good agreement
with the EPR spectroscopy. Computation indicates that the strength
of the interaction can be predicted by the <i>F</i><sub>max</sub> value and depends on the number of OH or CO groups of the
ligands that can interact with different sites on the protein surface
and, more particularly, with those in the vicinity of the active site
of the enzyme. The interaction strength determines the type of signal
revealed (<i>rigid limit</i>, <i>slow tumbling</i>, or <i>isotropic</i>) in the EPR spectra. Spectroscopic
and computational results also suggest that there are several sites
with comparable binding energy, with the V complexes distributing
among them in a bound state and in aqueous solution in an unbound
state. This kind of study and analysis could be generalized to determine
the noncovalent binding modes of a generic metal species with a generic
protein
Nonoxido Vanadium(IV) Compounds Involving Dithiocarbazate-Based Tridentate ONS Ligands: Synthesis, Electronic and Molecular Structure, Spectroscopic and Redox Properties
A new series of nonoxido vanadium(IV)
compounds [VL<sub>2</sub>] (L = L<sup>1</sup>–L<sup>3</sup>) (<b>1</b>–<b>3</b>) have been synthesized using
dithiocarbazate-based tridentate
Schiff-base ligands H<sub>2</sub>L<sup>1</sup>–H<sub>2</sub>L<sup>3</sup>, containing an appended phenol ring with a <i>tert</i>-butyl substitution at the 2-position. The compounds
are characterized by X-ray diffraction analysis (<b>1</b>, <b>3</b>), IR, UV-vis, EPR spectroscopy, and electrochemical methods.
These are nonoxido V<sup>IV</sup> complexes that reveal a rare distorted
trigonal prismatic arrangement around the “bare” vanadium
centers. Concerning the ligand isomerism, the structure of <b>1</b> and <b>3</b> can be described as intermediate between <i>mer</i> and <i>sym-fac</i> isomers. DFT methods were
used to predict the geometry, <b>g</b> and <sup>51</sup>V <b>A</b> tensors, electronic structure, and electronic absorption
spectrum of compounds <b>1</b>–<b>3</b>. Hyperfine
coupling constants measured in the EPR spectra can be reproduced satisfactorily
at the level of theory PBE0/VTZ, whereas the wavelength and intensity
of the absorptions in the UV-vis spectra at the level CAM-B3LYP/gen,
where “gen” is a general basis set obtained using 6-31+g(d)
for S and 6-31g for all the other elements. The results suggest that
the electronic structure of <b>1</b>–<b>3</b> can
be described in terms of a mixing among V-<i>d</i><sub><i>xy</i></sub>, V-<i>d</i><sub><i>xz</i></sub>, and V-<i>d</i><sub><i>yz</i></sub> orbitals
in the singly occupied molecular orbital (SOMO), which causes a significant
lowering of the absolute value of the <sup>51</sup>V hyperfine coupling
constant along the <i>x</i>-axis. The cyclic voltammograms
of these compounds in dichloroethane solution display three one-electron
processes, two in the cathodic and one in the anodic potential range.
Process A (<i>E</i><sub>1/2</sub> = +1.06 V) is due to the
quasi-reversible V(IV/V) oxidation while process B at <i>E</i><sub>1/2</sub> = −0.085 V is due to the quasi-reversible V(IV/III)
reduction, and the third one (process C) at a more negative potential <i>E</i><sub>1/2</sub> = −1.66 V is due to a ligand centered
reduction, all potentials being measured vs Ag/AgCl reference
Elucidation of Binding Site and Chiral Specificity of Oxidovanadium Drugs with Lysozyme through Theoretical Calculations
This study presents
an implementation of the protein–ligand docking program GOLD
and a generalizable method to predict the binding site and orientation
of potential vanadium drugs. Particularly, theoretical methods were
applied to the study of the interaction of two V<sup>IV</sup>O complexes
with antidiabetic activity, [V<sup>IV</sup>O(pic)<sub>2</sub>(H<sub>2</sub>O)] and [V<sup>IV</sup>O(ma)<sub>2</sub>(H<sub>2</sub>O)],
where pic is picolinate and ma is maltolate, with lysozyme (Lyz) for
which electron paramagnetic resonance spectroscopy suggests the binding
of the moieties VO(pic)<sub>2</sub> and VO(ma)<sub>2</sub> through
a carboxylate group of an amino acid residue (Asp or Glu). The work
is divided in three parts: (1) the generation of a new series of parameters
in GOLD program for vanadium compounds and the validation of the method
on five X-ray structures of V<sup>IV</sup>O and V<sup>V</sup> species
bound to proteins; (2) the prediction of the binding site and enantiomeric
preference of [VO(pic)<sub>2</sub>(H<sub>2</sub>O)] to lysozyme, for
which the X-ray diffraction analysis displays the interaction of a
unique isomer (i.e., OC-6–23-Δ) through Asp52 residue,
and the subsequent refinement of the results with quantum mechanics/molecular
mechanics methods; (3) the application of the same approach to the
interaction of [VO(ma)<sub>2</sub>(H<sub>2</sub>O)] with lysozyme.
The results show that convenient implementation of protein–ligand
docking programs allows for satisfactorily reproducing X-ray structures
of metal complexes that interact with only one coordination site with
proteins and predicting with blind procedures relevant low-energy
binding modes. The results also demonstrate that the combination of
docking methods with spectroscopic data could represent a new tool
to predict (metal complex)–protein interactions and have a
general applicability in this field, including for paramagnetic species
Synthesis and Characterization of V<sup>IV</sup>O Complexes of Picolinate and Pyrazine Derivatives. Behavior in the Solid State and Aqueous Solution and Biotransformation in the Presence of Blood Plasma Proteins
Oxidovanadium(IV) complexes with
5-cyanopyridine-2-carboxylic acid (HpicCN), 3,5-difluoropyridine-2-carboxylic
acid (HpicFF), 3-hydroxypyridine-2-carboxylic acid (H<sub>2</sub>hypic),
and pyrazine-2-carboxylic acid (Hprz) have been synthesized and characterized
in the solid state and aqueous
solution through elemental analysis, IR and EPR spectroscopy, potentiometric
titrations, and DFT simulations. The crystal structures of the complexes
(<i>OC</i>-6-23)-[VO(picCN)<sub>2</sub>(H<sub>2</sub>O)]·2H<sub>2</sub>O (<b>1</b>·2H<sub>2</sub>O), (<i>OC</i>-6-24)-[VO(picCN)<sub>2</sub>(H<sub>2</sub>O)]·4H<sub>2</sub>O (<b>2</b>·4H<sub>2</sub>O), (<i>OC</i>-6-24)-Na[VO(Hhypic)<sub>3</sub>]·H<sub>2</sub>O (<b>4</b>), and two enantiomers
of (<i>OC</i>-6-24)-[VO(prz)<sub>2</sub>(H<sub>2</sub>O)]
(Λ-<b>5</b> and Δ-<b>5</b>) have been determined
also by X-ray crystallography. <b>1</b> presents the first crystallographic
evidence for the formation of a <i>OC</i>-6-23 isomer for
bis(picolinato) V<sup>IV</sup>O complexes, whereas <b>2</b>, <b>4</b>, and <b>5</b> possess the more common <i>OC</i>-6-24 arrangement. The strength order of the ligands is H<sub>2</sub>hypic ≫ HpicCN > Hprz > HpicFF, and this results in
a different behavior at pH 7.40. In organic and aqueous solution the
three isomers <i>OC</i>-6-23, <i>OC</i>-6-24,
and <i>OC</i>-6-42 are formed, and this is confirmed by
DFT simulations. In all the systems with apo-transferrin (VO)<sub>2</sub>(apo-hTf) is the main species in solution, with the hydrolytic
V<sup>IV</sup>O species becoming more important with lowering the
strength of the ligand. In the systems with albumin, (VO)<sub><i>x</i></sub>HSA (<i>x</i> = 5, 6) coexists with VOL<sub>2</sub>(HSA) and VOL(HSA)(H<sub>2</sub>O) when L = picCN, prz, with
[VO(Hhypic)(hypic)]<sup>−</sup>, [VO(hypic)<sub>2</sub>]<sup>2–</sup>, and [(VO)<sub>4</sub>(μ-hypic)<sub>4</sub>(H<sub>2</sub>O)<sub>4</sub>] when H<sub>2</sub>hypic is studied,
and with the hydrolytic V<sup>IV</sup>O species when HpicFF is examined.
Finally, the consequence of the hydrolysis on the binding of V<sup>IV</sup>O<sup>2+</sup> to the blood proteins, the possible uptake
of V species by the cells, and the possible relationship with the
insulin-enhancing activity are discussed