21 research outputs found
Oxidative Coupling or Reductive Coupling? Effect of Surroundings on the Reaction Route of the Plasmonic Photocatalysis of Nitroaniline
Recent studies demonstrated that
aromatic amines and aromatic nitro
compounds could be converted to the corresponding azo species during
surface-enhanced Raman experiments. It is very interesting to study
the reaction mechanism for molecules that contain both an amino group
and a nitro group, nitroaniline isomers. DFT calculations are applied
to study the surface-enhanced Raman scattering and plasmonic photocatalysis
of nitroaniline isomers on silver surfaces. The normal Raman and surface
Raman spectra of nitroaniline isomers are first simulated and compared
with experimental results. The calculated Raman spectra of <i>o</i>-nitroaniline (ONA), <i>m</i>-nitroaniline (MNA),
and <i>p</i>-nitroaniline (PNA) correspond to their solid-state
Raman spectra. However, the simulated surface Raman spectra of nitroaniline–silver
complexes are significantly different from the experimental SERS spectra.
According to the theoretical simulation, the appearance of new peaks
in the SERS experiments of nitroaniline is attributed to the formation
of new surface species. Two possible reaction routes, an oxidative
coupling route and a reductive coupling route, are suggested to be
involved in surface plasmon-mediated photocatalysis of nitroaniline
on silver. It is found that the reaction route of nitroaniline on
silver is strongly affected by the surroundings. The potential energy
curves for the photocatalysis of PNA in the air and in the solution
are presented. In the case that PNA is exposed in the air in the presence
of oxygen, PNAs are oxidized to dinitroazobenzene (DNAB) by the surface
activated oxygen species. In the case that PNA is immersed in the
solution in the absence of oxygen, PNAs are reduced to diaminoazobenzene
(DAAB) by the excited hot electrons. Finally, the Raman spectra of
oxidative coupling product DNAB and reductive product DAAB are simulated.
They are in good agreement with the abnormal Raman signals in SERS
experiments of nitroaniline on silver
Theoretical Investigation on the Substituent Effect of Halogen Atoms at the C<sub>8</sub> Position of Adenine: Relative Stability, Vibrational Frequencies, and Raman Spectra of Tautomers
We have theoretically investigated
the substituent effect of adenine
at the C<sub>8</sub> position with a substituent X = H, F, Cl, and
Br by using the density functional theory (DFT) at the B3LYP/6-311+GÂ(d,
p) level. The aim is to study the substituent effect of halogen atoms
on the relative stability, vibrational frequencies, and solvation
effect of tautomers. Our calculated results show that for substituted
adenine molecules the N9H8X tautomer to be the most stable structure
in gas phase at the present theoretical level. Here N9H8X denotes
the hydrogen atom binds to the N<sub>9</sub> position of imidazole
ring and X denotes H, F, Cl, and Br atoms. The influence of the induced
attraction of the fluorine substituent is significantly larger than
chlorine and bromine ones. The halogen substituent effect has a significant
influence on changes of vibrational frequencies and Raman intensities
Theoretical Study on Thermodynamic and Spectroscopic Properties of Electro-Oxidation of <i>p</i>‑Aminothiophenol on Gold Electrode Surfaces
The electro-oxidation of <i>p</i>-aminothiophenol (PATP)
on gold electrodes has been investigated by means of density functional
theory. A combination of thermodynamic calculations and surface Raman
and infrared (IR) spectral simulations has allowed us to reveal the
electro-oxidation mechanism and reaction products of PATP on gold
electrodes in acidic, neutral, and basic solutions. PATP can be first
oxidized to the radical cation PATPÂ(NH<sub>2</sub><sup>•+</sup>) or the neutral radical PATPÂ(NH<sup>•</sup>) depending on
the pH of aqueous solutions, and this is the rate-determining step.
The radical cation or neutral radical can then transform to the dimerized
products through a radical coupling reaction. In the acidic medium,
the radical cation reacts with its resonance hybrid through a N–C4
coupling to form 4′-mercapto-<i>N</i>-phenyl-1,4-quinone
diimine (D1), which can further undergo hydrolysis to yield 4′-mercapto-<i>N</i>-phenyl-1,4-quinone monoimine (D2). In the neutral medium,
the neutral radical reacts with its resonance hybrid through the N–C2(6)
coupling to form 4,4′-dimercapto-<i>N</i>-phenyl-1,2-quinone
diimine (D3). In the basic medium, the neutral radical reacts with
its resonance structure through the N–N coupling to form 4,4′-diÂmercaptoÂazoÂbenzene
(D4). The adsorbed dimer products exhibit reversible redox properties.
The calculated standard electrode potentials of the above four species
decrease in the order D3, D1, D2, and D4. Finally, the characteristic
bands for the surface Raman and IR spectra of D1 to D4 redox pairs
are clearly assigned. This study provides mechanistic insight into
the electrochemical reaction properties of PATP on metal electrodes
Boosting Formate Production in Electrocatalytic CO<sub>2</sub> Reduction over Wide Potential Window on Pd Surfaces
Facile interconversion between CO<sub>2</sub> and formate/formic
acid (FA) is of broad interest in energy storage and conversion and
neutral carbon emission. Historically, electrochemical CO<sub>2</sub> reduction reaction to formate on Pd surfaces was limited to a narrow
potential range positive of −0.25 V (vs RHE). Herein, a boron-doped
Pd catalyst (Pd–B/C), with a high CO tolerance to facilitate
dehydrogenation of FA/formate to CO<sub>2</sub>, is initially explored
for electrochemical CO<sub>2</sub> reduction over the potential range
of −0.2 V to −1.0 V (vs RHE), with reference to Pd/C.
The experimental results demonstrate that the faradaic efficiency
for formate (η<sub>HCOO<sup>–</sup></sub>) reaches ca.
70% over 2 h of electrolysis in CO<sub>2</sub>-saturated 0.1 M KHCO<sub>3</sub> at −0.5 V (vs RHE) on Pd–B/C, that is ca. 12
times as high as that on homemade or commercial Pd/C, leading to a
formate concentration of ca. 234 mM mg<sup>–1</sup> Pd, or
ca. 18 times as high as that on Pd/C, without optimization of the
catalyst layer and the electrolyte. Furthermore, the competitive selectivity
η<sub>HCOO<sup>–</sup>/</sub>η<sub>CO</sub> on
Pd–B/C is always significantly higher than that on Pd/C despite
a decreases of η<sub>HCOO<sup>–</sup></sub> and an increases
of the CO faradaic efficiency (η<sub>CO</sub>) at potentials
negative of −0.5 V. The density functional theory (DFT) calculations
on energetic aspects of CO<sub>2</sub> reduction reaction on modeled
Pd(111) surfaces with and without H-adsorbate reveal that the B-doping
in the Pd subsurface favors the formation of the adsorbed HCOO*, an
intermediate for the FA pathway, more than that of *COOH, an intermediate
for the CO pathway. The present study confers Pd–B/C a unique
dual functional catalyst for the HCOOH ↔ CO<sub>2</sub> interconversion
Theoretical Study on Electroreduction of <i>p</i>‑Nitrothiophenol on Silver and Gold Electrode Surfaces
The electroreduction
of <i>p</i>-nitrothiophenol (PNTP)
on gold and silver electrodes has been investigated by means of density
functional theory. A combination of thermodynamic calculations and
surface Raman/IR spectral simulations has allowed us to reveal the
reaction mechanism and reaction products of electroreduction of PNTP
on metal electrodes. First, thermodynamic calculations were carried
out to calculate the standard electrode potentials of PNTP and its
possible intermediates. The potential energy curves of PNTP reduction
as a function of the applied potential are obtained on the basis of
the calculated standard electrode potentials of the elementary electrochemical
reactions. Second, surface vibrational spectral simulation was performed
to provide theoretical assignments of reaction products for the in
situ Raman/IR experimental studies of electroreduction of PNTP. The
most interesting finding in the reaction product identified by IR
spectroscopy is PATP; however, Raman spectroscopy shows that the main
product is <i>p</i>,<i>p</i>′-dimercaptoazobenzene
(DMAB). The difference between IR and Raman measurements arises from
the fact that the incident laser used in Raman measurement can induce
the formation of DMAB by photoreduction of PNTP or photo-oxidation
of PATP. Finally, the reaction mechanism of electroreduction of PNTP
was compared with its photoreduction mechanism
DFT Study of Hydrogen-Bonding Interaction, Solvation Effect, and Electric-Field Effect on Raman Spectra of Hydrated Proton
Strong hydrogen-bonding
interaction and Raman spectra of hydrated proton have been investigated
using hybrid density functional theory method B3LYP. The solvation
model of density (SMD) approach is employed in the present calculation
to simulate hydrated protons in aqueous solution. Focusing on the
different hydrogen-bonded Eigen-water and Zundel-water interactions,
we present a better assignment of Raman signals of hydrated proton
on the basis of vibrational analysis in different environments. Our
results showed that B3LYP calculations could give a good prediction
for characteristic vibrational frequencies of Eigen and Zundel isomers
in liquid phase. The O–H stretching vibrational frequencies
from Eigen and Zundel units are very sensitive to hydrogen-bonding
interaction with solvent water molecules. Moreover, the solvation
effect and the external electric-field effect lead to the proton deviating
from the central position of Zundel structure and finally resulting
in a transition to Eigen one in aqueous solution. Furthermore, by
combining theoretical prediction and Raman scattering theory, we calculate
absolute Raman intensities of characteristic signals based on the
polarizability tensor derivatives of hydrated proton clusters. This
is very helpful to infer the microstructure of hydrated protons in
aqueous solution by using Raman measurements
Revealing Intermolecular Interaction and Surface Restructuring of an Aromatic Thiol Assembling on Au(111) by Tip-Enhanced Raman Spectroscopy
Controlling the packing structure
and revealing the intermolecular
interaction of self-assembled monolayers (SAMs) on solid surfaces
are crucial for manipulating its properties. We utilized tip-enhanced
Raman spectroscopy (TERS) to address the challenge in probing the
subtle change of the intermolecular interaction during the assembly
of a pyridine-terminated aromatic thiol on the single crystal Au(111)
surface that cannot produce enhanced Raman signal, together with electrochemical
methods to study the charge transfer properties of SAM. We observed
that the aromatic Cî—»C bond stretching vibration can be a marker
to monitor the strength of the intermolecular interaction of SAMs,
because this Raman peak is very sensitive to the intermolecular π–π
stacking. Our results indicate that the SAM experiences a surface
restructuring after the formation of a densely packed monolayer. We
propose that the intermolecular electrostatic repulsion governs the
restructuring when the packing density is high. The correlated TERS
and electrochemical studies also suggest that the intermolecular interaction
may have some impact on the charge transfer properties of SAM. This
study provides a molecular-level insight into understanding and exploiting
the intermolecular interactions toward better control over the assembling
process and tuning the electrical properties of aromatic thiols
Structural and Charge Sensitivity of Surface-Enhanced Raman Spectroscopy of Adenine on Silver Surface: A Quantum Chemical Study
The interaction of adenine with silver
surfaces has been investigated
using density functional method. Two isomers of N9H and N7H were included
to model surface species. Considering the complexity of silver surfaces
in surface-enhanced Raman spectroscopy, neutral and positive silver
clusters were used to mimic the substrate. Following the bonding principle,
we consider adenine-approached silver clusters in different configurations
and their relation to the Raman spectra. For neutral adenine Ag<sub><i>n</i></sub> (<i>n</i> = 4, 7, and 9) complexes,
N9H–Ag<sub><i>n</i></sub> complexes are more stable
than N7H–Ag<sub><i>n</i></sub> ones. The corresponding
Raman spectra strongly depended on the structure of adenine and the
adsorption sites. Moreover, we find N7H interacts with one positively
charged silver cluster via N3 and N9 at the same time as the most
stable surface complex, which can reproduce the experimental surface
Raman spectra of adenine well on silver surfaces
Solvent Effect and Hydrogen Bond Interaction on Tautomerism, Vibrational Frequencies, and Raman Spectra of Guanine: A Density Functional Theoretical Study
Stable
structures and Raman spectra of guanine have been investigated by
density functional theory (DFT). Focusing on solvent effect and hydrogen
bonding interaction, we have calculated the two keto-amino tautomers
G17K and G19K as well as their guanine–water complexes and
tetramers. The results show G17K is more stable than G19K in the gas
phase, whereas in polar solvents G19K dominates. The vibrational fundamentals
of G17K have been reassigned based on normal-mode analysis, since
the previous assignment was limited to the G19K only. In the Raman
spectra, the modes of the ring breathing vibration and those in the
fingerprint region (from 1000 to 1600 cm<sup>–1</sup>) affected
by the solvent effect and the hydrogen bonding interaction dramatically.
The band at 1163 cm<sup>–1</sup> of G17K in gas has a large
blue shift when water molecule forms hydrogen bonds with N<sub>7</sub>–H<sub>16</sub> and C<sub>6</sub>O<sub>13</sub> sites.
The blue shift can be explained by the influence of hydrogen bonding
interaction along with shortening the N<sub>1</sub>–C<sub>6</sub> bond distance. In addition, the dominant existing tautomer in polycrystalline
and powder guanine is proposed to be G17K, whose calculated vibrational
frequencies agree with the experimental Raman spectra reported before
Alkyne-Modulated Surface-Enhanced Raman Scattering-Palette for Optical Interference-Free and Multiplex Cellular Imaging
The alkyne tags possess
unique interference-free Raman emissions
but are still hindered for further application in the field of biochemical
labels due to its extremely weak spontaneous Raman scattering. With
the aid of computational chemistry, herein, an alkyne-modulated surface-enhanced
Raman scattering (SERS) palette is constructed based on rationally
designed 4-ethynylbenzenethiol derivatives for spectroscopic signature,
Au@Ag core for optical enhancement and an encapsulating polyallylamine
shell for protection and conjugation. Even for the pigment rich plant
cell (e.g., pollen), the alkyne-coded SERS tag can be highly discerned
on two-dimension distribution impervious to strong organic interferences
originating from resonance-enhanced Raman scattering or autofluorescence.
In addition, the alkynyl-containing Raman reporters contribute especially
narrow emission, band shift-tunable (2100–2300 cm<sup>–1</sup>) and tremendously enhanced Raman signals when the alkynyl group
locates at para position of mercaptobenzene ring. Depending on only
single Raman band, the suggested alkyne-modulated SERS-palette potentially
provides a more effective solution for multiplex cellular imaging
with vibrant colors, when the hyperspectral and fairly intense optical
noises originating from lower wavenumber region (<1800 cm<sup>–1</sup>) are inevitable under complex ambient conditions