7 research outputs found
Additional file 7: of GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data
Scoring table for GO terms produced by GOexpress using the ExpressionSet described in the paper (see Additional file 1). (XLSX 871Â kb
Additional file 4: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies
Quality control plots for all samples generated after EDMA microarray hybridization and data analysis. (PDF 2803 kb
Additional file 3: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies
IPA output. (XLS 72 kb
Additional file 5: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies
Table S1. Pyrosequencing primers used for array validation. Table S2. Primers used for gene expression analysis. (DOCX 17 kb
Additional file 2: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies
Comparison of differentially methylated genes with previously published imprinted genes. (XLS 28 kb
Additional file 1: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies
Full list of differentially methylated probes and their genomic coordinates. (XLS 820 kb
Additional file 2: of Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle
Variant effect predictor results. Detailed results from the variant effect predictor (VEP) analyses applied to the CPC98 aurochs and modern animal SNPs and indels. (XLSX 114 kb