Advancements in web-database applications for rabies surveillance

Abstract Background Protection of public health from rabies is informed by the analysis of surveillance data from human and animal populations. In Canada, public health, agricultural and wildlife agencies at the provincial and federal level are responsible for rabies disease control, and this has led to multiple agency-specific data repositories. Aggregation of agency-specific data into one database application would enable more comprehensive data analyses and effective communication among participating agencies. In Québec, RageDB was developed to house surveillance data for the raccoon rabies variant, representing the next generation in web-based database applications that provide a key resource for the protection of public health. Results RageDB incorporates data from, and grants access to, all agencies responsible for the surveillance of raccoon rabies in Québec. Technological advancements of RageDB to rabies surveillance databases include 1) automatic integration of multi-agency data and diagnostic results on a daily basis; 2) a web-based data editing interface that enables authorized users to add, edit and extract data; and 3) an interactive dashboard to help visualize data simply and efficiently, in table, chart, and cartographic formats. Furthermore, RageDB stores data from citizens who voluntarily report sightings of rabies suspect animals. We also discuss how sightings data can indicate public perception to the risk of racoon rabies and thus aid in directing the allocation of disease control resources for protecting public health. Conclusions RageDB provides an example in the evolution of spatio-temporal database applications for the storage, analysis and communication of disease surveillance data. The database was fast and inexpensive to develop by using open-source technologies, simple and efficient design strategies, and shared web hosting. The database increases communication among agencies collaborating to protect human health from raccoon rabies. Furthermore, health agencies have real-time access to a wide assortment of data documenting new developments in the raccoon rabies epidemic and this enables a more timely and appropriate response.</p

Postoperative effects of anesthesia and surgery on resting energy expenditure in horses as measured by indirect calorimetry

In this study, we aimed to define the effects of anesthesia and surgery on the resting energy expenditure of horses in experimental conditions. Six horses were used in a longitudinal study with 2 study periods: before and after anesthesia and surgery. Every horse underwent a standard 90-min ventral midline exploratory laparotomy. Oxygen uptake ( [Image: see text]) and carbon dioxide output ( [Image: see text]) were measured, with the use of a closed-circuit spirometry system, on 5 consecutive days immediately before and after the surgery. In 3 consecutive 5-min periods each day, the expired air was collected in a Collins spirometer. Samples of the expired gas were drawn from the spirometer through a drying column into O(2) and CO(2) analyzers. Resting energy expenditure was calculated as [( [Image: see text] *3.94) + ( [Image: see text] *1.11)]*1.44. This study showed that anesthesia and ventral midline exploratory laparotomy in experimental conditions increase the postoperative caloric demand in horses by an average of 1.0 Mcal/d, which represents approximately a 10% increase (P = 0.03). Additional studies in critically ill horses after surgery are needed to determine their caloric needs and to optimize their nutritional management

microRNAs are differentially expressed in equine plasma of horses with osteoarthritis and osteochondritis dissecans versus control horses.

Osteoarthritis (OA) is a leading cause of lameness in horses with no effective disease-modifying treatment and challenging early diagnosis. OA is considered a disease of the joint involving the articular cartilage, subchondral bone, synovial membrane, and ligaments. Osteochondritis dissecans (OCD) is a joint disease consisting of focal defects in the osteochondral unit which may progress to OA later in life. MicroRNAs (miRNAs) have been recognized as small non-coding RNAs that regulate a variety of biological processes and have been detected in biological fluids. MiRNAs are currently investigated for their utility as biomarkers and druggable targets for a variety of diseases. The current study hypothesizes that miRNA profiles can be used to actively monitor joint health and differences in miRNA profiles will be found in healthy vs diseased joints and that differences will be detectable in blood plasma of tested horses. Five horses with OA, OCD, and 4 controls (C) had blood plasma and synovial fluid collected. Total RNA, including miRNA was isolated before generating miRNA libraries from the plasma of the horses. Libraries were sequenced at the Schroeder Arthritis Institute (Toronto). Differential expression analysis was done using DESeq2 and validated using ddPCR. KEGG pathway analysis was done using mirPath v.3 (Diana Tools). 57 differentially expressed miRNAs were identified in OA vs C plasma, 45 differentially expressed miRNAs in OC vs C plasma, and 21 differentially expressed miRNAs in OA vs OCD plasma. Notably, miR-140-5p expression was observed to be elevated in OA synovial fluid suggesting that miR-140-5p may serve as a protective marker early on to attenuate OA progression. KEGG pathway analysis of differentially expressed plasma miRNAs showed relationships with glycan degradation, glycosaminoglycan degradation, and hippo signaling pathway. Interestingly, ddPCR was unable to validate the NGS data suggesting that isomiRs may play an integral role in miRNA expression when assessed using NGS technologies

NGS analysis of OA vs OCD equine plasma.

a) PCA plot of OA and OCD equine blood plasma groups; b) Heatmap of differentially expressed miRNAs in OA vs OCD plasma. Towards red indicates a fold increase; towards blue represents a fold decrease; c) Pathway analysis using miRPath v.3 and Tarbase v7.0 assessing derived interactions and indicated pathways to have predicted interactions with miRNAs identified to be differentially expressed.</p

Statistical data of differentially expressed miRNAs equine plasma of OA vs C with a 1.5-log2FC or greater change in expression (p < 0.05).

Statistical data of differentially expressed miRNAs equine plasma of OA vs C with a 1.5-log2FC or greater change in expression (p < 0.05).</p

Volcano Plot of OA vs OCD plasma; LFC cut off = 1.5 and p-value cut off = 0.05; adjusted p-value was used; miRNAs marked in red are those shown to meet both the LFC and p-value cut offs.

Volcano Plot of OA vs OCD plasma; LFC cut off = 1.5 and p-value cut off = 0.05; adjusted p-value was used; miRNAs marked in red are those shown to meet both the LFC and p-value cut offs.</p