MOESM5 of Detection and validation of structural variations in bovine whole-genome sequence data

Additional file 5: Table S7. RefSeq genes that overlap with SV. This file contains the RefSeq genes that overlapped with the validated SV set and the length of the overlap and percentage covered for those genes

Additional file 3: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S1. RNA-seq reads mapped to different bovine genome origins. (XLSX 14 kb

Additional file 10: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S8. SNP overlap between expression QTLs and SNPs with pleiotropic effects on conventional traits of dairy cattle. (XLSX 38 kb

Additional file 7: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S5. Genes that display significant differential splicing between breeds. (XLSX 38 kb

Additional file 4: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S2. Splicing junction annotation analysis using BAM files generated by different alignment software. (XLSX 13 kb

Additional file 8: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S6. Summary of significant cis splicing sQTLs (within 1 Mb distance to the exon). (XLSX 14902 kb

Additional file 6: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S4. Genes that display significant differential splicing cross tissues. (XLSX 18699 kb

Additional file 1: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Supplementary Methods. (DOCX 42 kb

Additional file 9: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S7. Summary table for count values of sQTLs and eeQTLs in white blood and milk cells. (XLSX 9 kb

Additional file 5: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Table S3. 2 × 2 tables for the overlap between exon and intron analyses. (XLSX 15 kb