9 research outputs found
Additional file 1: Figure S1. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini
Quality metrics for RNA samples used in the RNA-Seq experiment. Electrophoresis results and RIN graphs are included for (A) P. westermani and (B) P. skrjabini. (TIF 372Â kb
Additional file 4: Table S3. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini
KEGG module representation and completeness for P. westermani and P. skrjabini. (XLSX 49Â kb
Additional file 2: Table S1. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini
Complete functional annotation and expression data for P. westermani transcripts. (XLSX 6726Â kb
Additional file 7: Figure S2. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
Comparison of MiSeq and 454 sequencing platforms. (A) MiSeq identifies more unique bacterial taxa to the genus and family than 454. (B) Identified taxa are supported by more reads with MiSeq than with 454, improving statistical comparison power. (TIFF 334Â kb
Additional file 3: Table S3. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
Enrichment results, metadata and depths of coverage per genome for the 24 MS samples from Indonesia and Liberia. (XLSX 221Â kb
Additional file 6: Figure S1. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
Metadata analysis for Indonesia and Liberia datasets. (A) Hierarchical All-against-All (HAIIA) significance testing for metadata. (BâE) Principal component analysis (PCA) plots based on relative taxa abundance for all taxa identified in three or more samples, among heavy-infected or non-infected samples, are shown for Indonesia, with color coding according to (B) comparison cohort and (C) village and sex metadata, and for Liberia, with color coding according to (D) infected vs uninfected samples and (E) village and sex metadata. No significant differential clustering was identified, according to PERMANOVA. (TIFF 429Â kb
Additional file 2: Table S2. of Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
Metadata and read counts per taxa for the 216 16S samples from Indonesia. (XLSX 1655Â kb