Conformational Distributions and Hydrogen Bonding in Gel and Frozen Lipid Bilayers: A High Frequency Spin-Label ESR Study

The ESR parameters of PC spin labels in frozen membranes do not simply represent the membrane polarity or water penetration profile. Instead, they show a distribution between hydrogen-bonded (HB) and non-hydrogen-bonded (non-HB) states, which is affected by a number of factors in the membrane composition. Similar to the exclusion of solutes from crystallizing solvents, the pure bulk gel phase excludes nitroxides, forcing acyl chains to take bent conformations. In these conformations, the nitroxide is hydrogen-bonded. Furthermore, upon gradual cooling in the supercooled gel, PC labels undergo slow lateral aggregation, resulting in a broad background signal. However, if the sample is instantly frozen, this background is replaced by the HB component. In membranes with cholesterol, the observed HB/non-HB ratio can best be described by a partition-like equilibrium between nitroxides located in defects of lipid structure within the hydrophobic core and those close to the membrane surface

Interaction of Spin-Labeled Lipid Membranes with Transition Metal Ions

The large values of spin relaxation enhancement (RE) for PC spin-labels in the phospholipid membrane induced by paramagnetic metal salts dissolved in the aqueous phase can be explained by Heisenberg spin exchange due to conformational fluctuations of the nitroxide group as a result of membrane fluidity, flexibility of lipid chains, and, possibly, amphiphilic nature of the nitroxide label. Whether the magnetic interaction occurs predominantly via Heisenberg spin exchange (Ni) or by the dipole–dipole (Gd) mechanism, it is essential for the paramagnetic ion to get into close proximity to the nitroxide moiety for efficient RE. For different salts of Ni the RE in phosphatidylcholine membranes follows the anionic Hofmeister series and reflects anion adsorption followed by anion-driven attraction of paramagnetic cations on the choline groups. This adsorption is higher for chaotropic ions, e.g., perchlorate. (A chaotropic agent is a molecule in water solution that can disrupt the hydrogen bonding network between water molecules.) However, there is no anionic dependence of RE for model membranes made from negatively charged lipids devoid of choline groups. We used Ni-induced RE to study the thermodynamics and electrostatics of ion/membrane interactions. We also studied the effect of membrane composition and the phase state on the RE values. In membranes with cholesterol a significant difference is observed between PC labels with nitroxide tethers long enough vs not long enough to reach deep into the membrane hydrophobic core behind the area of fused cholesterol rings. This study indicates one must be cautious in interpreting data obtained by PC labels in fluid membranes in terms of probing membrane properties at different immersion depths when it can be affected by paramagnetic species at the membrane surface

Magnetic Interaction of Transition Ion Salts with Spin Labeled Lipid Membranes: Interplay of Anion-Specific Adsorption, Electrostatics, and Membrane Fluidity

Magnetic Interaction of Transition Ion Salts with Spin Labeled Lipid Membranes: Interplay of Anion-Specific Adsorption, Electrostatics, and Membrane Fluidit

Controlled Dopant Migration in CdS/ZnS Core/Shell Quantum Dots

The physical properties of a doped quantum dot (QD) are strongly influenced by the dopant site inside the host lattice, which determines the host–dopant coupling from the overlap between the dopant and exciton wave functions of the host lattice. Although several synthetic methodologies have been developed for introducing dopants inside the size-confined semiconductor nanocrystals, the controlled dopant-host lattice coupling by dopant migration is still unexplored. In this work, the effect of lattice mismatch of CdS/ZnS core/shell QDs on Mn­(II) dopant behavior was studied. It was found that the dopant migration toward the alloyed interface of core/shell QDs is a thermodynamically driven process to minimize the lattice strain within the nanocrystals. The dopant migration rate could be represented by the Arrhenius equation and therefore can be controlled by the temperature and lattice mismatch. Furthermore, the energy transfer between host CdS QDs and dopants can be finely turned in a wide range by dopant migration toward the alloyed interface during ZnS shell passivation, which provides an efficient method to control both the number of the emission band and the ratio of the emission from the host lattice and dopant ions

Substrate-Dependent Cleavage Site Selection by Unconventional Radical <i>S</i>‑Adenosylmethionine Enzymes in Diphthamide Biosynthesis

<i>S</i>-Adenosylmethionine (SAM) has a sulfonium ion with three distinct C-S bonds. Conventional radical SAM enzymes use a [4Fe-4S] cluster to cleave homolytically the C_{5′,adenosine}-S bond of SAM to generate a 5′-deoxyadenosyl radical, which catalyzes various downstream chemical reactions. Radical SAM enzymes involved in diphthamide biosynthesis, such as Pyrococcus horikoshii Dph2 (<i>Ph</i>Dph2) and yeast Dph1-Dph2 instead cleave the C_γ,Met-S bond of methionine to generate a 3-amino-3-carboxylpropyl radical. We here show radical SAM enzymes can be tuned to cleave the third C-S bond to the sulfonium sulfur by changing the structure of SAM. With a decarboxyl SAM analogue (dc-SAM), <i>Ph</i>Dph2 cleaves the C_methyl-S bond, forming 5′-deoxy-5′-(3-aminopropylthio) adenosine (dAPTA, <b>1</b>). The methyl cleavage activity, like the cleavage of the other two C-S bonds, is dependent on the presence of a [4Fe-4S]⁺ cluster. Electron-nuclear double resonance and mass spectroscopy data suggests that mechanistically one of the S atoms in the [4Fe-4S] cluster captures the methyl group from dc-SAM, forming a distinct EPR-active intermediate, which can transfer the methyl group to nucleophiles such as dithiothreitol. This reveals the [4Fe-4S] cluster in a radical SAM enzyme can be tuned to cleave any one of the three bonds to the sulfonium sulfur of SAM or analogues, and is the first demonstration a radical SAM enzyme could switch from an Fe-based one electron transfer reaction to a S-based two electron transfer reaction in a substrate-dependent manner. This study provides an illustration of the versatile reactivity of Fe-S clusters

Interface Engineering of Mn-Doped ZnSe-Based Core/Shell Nanowires for Tunable Host–Dopant Coupling

Transition metal ion doped one-dimensional (1-D) nanocrystals (NCs) have advantages of larger absorption cross sections and polarized absorption and emissions in comparison to 0-D NCs. However, direct synthesis of doped 1-D nanorods (NRs) or nanowires (NWs) has proven challenging. In this study, we report the synthesis of 1-D Mn-doped ZnSe NWs using a colloidal hot-injection method and shell passivation for core/shell NWs with tunable optical properties. Experimental results show optical properties of the NWs are controlled by the composition and thickness of the shell lattice. It was found that both the host–Mn energy transfer and Mn–Mn coupling are strongly dependent on the type of alloy at the interface of doped core/shell NWs. For Mn-doped type I ZnSe/ZnS core/shell NWs, the ZnS shell passivation can enhance florescence quantum yield with little effect on the location of the incorporated Mn dopant due to the identical cationic Zn²⁺ site available for Mn dopants throughout the core/shell NWs. However, for Mn-doped quasi type II ZnSe/CdS NWs and ZnSe/CdS/ZnS core/shell NWs, the cation alloying (Zn_1–<i>x</i>Cd_<i>x</i>S­(e)) can lead to metal dopant migration from the core to the alloyed interface and tunable host–dopant energy transfer efficiencies and Mn–Mn coupling. As a result, a tunable dual-band emission can be achieved for the doped NWs with the cation-alloyed interface. The interfacial alloying mediated energy transfer and Mn–Mn coupling provides a method to control the optical properties of the doped 1-D core/shell NWs

Dph3 Is an Electron Donor for Dph1-Dph2 in the First Step of Eukaryotic Diphthamide Biosynthesis

Diphthamide, the target of diphtheria toxin, is a unique posttranslational modification on translation elongation factor 2 (EF2) in archaea and eukaryotes. The biosynthesis of diphthamide was proposed to involve three steps. The first step is the transfer of the 3-amino-3-carboxypropyl group from <i>S</i>-adenosyl-l-methionine (SAM) to the histidine residue of EF2, forming a C–C bond. Previous genetic studies showed this step requires four proteins in eukaryotes, Dph1–Dph4. However, the exact molecular functions for the four proteins are unknown. Previous study showed that Pyrococcus horikoshii Dph2 (PhDph2), a novel iron-sulfur cluster-containing enzyme, forms a homodimer and is sufficient for the first step of diphthamide biosynthesis <i>in vitro</i>. Here we demonstrate by <i>in vitro</i> reconstitution that yeast Dph1 and Dph2 form a complex (Dph1-Dph2) that is equivalent to the homodimer of PhDph2 and is sufficient to catalyze the first step <i>in vitro</i> in the presence of dithionite as the reductant. We further demonstrate that yeast Dph3 (also known as KTI11), a CSL-type zinc finger protein, can bind iron and in the reduced state can serve as an electron donor to reduce the Fe-S cluster in Dph1-Dph2. Our study thus firmly establishes the functions for three of the proteins involved in eukaryotic diphthamide biosynthesis. For most radical SAM enzymes in bacteria, flavodoxins and flavodoxin reductases are believed to serve as electron donors for the Fe-S clusters. The finding that Dph3 is an electron donor for the Fe-S clusters in Dph1-Dph2 is thus interesting and opens up new avenues of research on electron transfer to Fe-S proteins in eukaryotic cells

Organometallic Complex Formed by an Unconventional Radical <i>S</i>‑Adenosylmethionine Enzyme

<i>Pyrococcus horikoshii</i> Dph2 (<i>Ph</i>Dph2) is an unusual radical <i>S</i>-adenosylmethionine (SAM) enzyme involved in the first step of diphthamide biosynthesis. It catalyzes the reaction by cleaving SAM to generate a 3-amino-3-carboxypropyl (ACP) radical. To probe the reaction mechanism, we synthesized a SAM analogue (SAM_CA), in which the ACP group of SAM is replaced with a 3-carboxy­allyl group. SAM_CA is cleaved by <i>Ph</i>Dph2, yielding a paramagnetic (<i>S</i> = 1/2) species, which is assigned to a complex formed between the reaction product, α-sulfinyl-3-butenoic acid, and the [4Fe-4S] cluster. Electron–nuclear double resonance (ENDOR) measurements with ¹³C and ²H isotopically labeled SAM_CA support a π-complex between the CC double bond of α-sulfinyl-3-butenoic acid and the unique iron of the [4Fe-4S] cluster. This is the first example of a radical SAM-related [4Fe-4S]⁺ cluster forming an organometallic complex with an alkene, shedding additional light on the mechanism of <i>Ph</i>Dph2 and expanding our current notions for the reactivity of [4Fe-4S] clusters in radical SAM enzymes