The differential diagnosis of Huntington's disease-like syndromes: 'red flags' for the clinician

A growing number of progressive heredodegenerative conditions mimic the presentation of Huntington's disease (HD). Differentiating among these HD-like syndromes is necessary when a patient with a combination of movement disorders, cognitive decline, behavioural abnormalities and progressive disease course proves negative to the genetic testing for HD causative mutations, that is, IT15 gene trinucleotide-repeat expansion. The differential diagnosis of HD-like syndromes is complex and may lead to unnecessary and costly investigations. We propose here a guide to this differential diagnosis focusing on a limited number of clinical features (‘red flags’) that can be identified through accurate clinical examination, collection of historical data and a few routine ancillary investigations. These features include the ethnic background of the patient, the involvement of the facio-bucco-lingual and cervical district by the movement disorder, the co-occurrence of cerebellar features and seizures, the presence of peculiar gait patterns and eye movement abnormalities, and an atypical progression of illness. Additional help may derive from the cognitive–behavioural presentation of the patient, as well as by a restricted number of ancillary investigations, mainly MRI and routine blood tests. These red flags should be constantly updated as the phenotypic characterisation and identification of more reliable diagnostic markers for HD-like syndromes progress over the following years

Shortest paths in orthogonal graphs

Orthogonal graphs were introduced as a simple but powerful tool for the description and analysis of a class of interconnection networks. Routing, and hence finding shortest paths between any two nodes of an orthogonal graph, becomes an important problem. It is shown in this paper that routing in this class of graphs reduces to a node covering problem in the bipartite coverage graph of the orthogonal graph. A minimum cover clearly leads to a shortest path. In general, the problem of finding the mínimum node cover in a bipartite graph is NP-complete. However, the bipartite coverage graphs corresponding to orthogonal graphs have a regular pattern of edges. This allows the development of a routing algorithm which results in a minimum cover. The procedure executes in polynomial time in the number of bit-nodes of the bipartite graph. It therefore results in a shortest path algorithm whose time complexity is quadratic in the logarithm of the number of nodes in the original orthogonal graph

Taming computational complexity: efficient and parallel SimRank optimizations on undirected graphs

SimRank has been considered as one of the promising link-based ranking algorithms to evaluate similarities of web documents in many modern search engines. In this paper, we investigate the optimization problem of SimRank similarity computation on undirected web graphs. We first present a novel algorithm to estimate the SimRank between vertices in O(n3+ Kn2) time, where n is the number of vertices, and K is the number of iterations. In comparison, the most efficient implementation of SimRank algorithm in [1] takes O(K n3 ) time in the worst case. To efficiently handle large-scale computations, we also propose a parallel implementation of the SimRank algorithm on multiple processors. The experimental evaluations on both synthetic and real-life data sets demonstrate the better computational time and parallel efficiency of our proposed techniques

Emerging from the MIST: A Connector Tool for Supporting Programming by Non-programmers

Software development is an iterative process. As user re-quirements emerge software applications must be extended to support the new requirements. Typically, a programmer will add new code to an existing code base of an application to provide a new functionality. Previous research has shown that such extensions are easier when application logic is clearly separated from the user interface logic. Assuming that a programmer is already familiar with the existing code base, the task of writing the new code can be considered to be split into two sub-tasks: writing code for the application logic; that is, the actual functionality of the application; and writing code for the user interface that will expose the functionality to the end user. The goal of this research is to reduce the effort required to create a user interface once the application logic has been created, toward supporting scientists with minimal pro-gramming knowledge to be able to create and modify pro-grams. Using a Model View Controller based architecture, various model components which contain the application logic can be built and extended. The process of creating and extending the views (user interfaces) on these model components is simplified through the use of our Malleable Interactive Software Toolkit (MIST), a tool set an infrastructure intended to simplify the design and extension of dynamically reconfigurable interfaces. This paper focuses on one tool in the MIST suite, a connec-tor tool that enables the programmer to evolve the user interface as the application logic evolves by connecting related pieces of code together; either through simple drag-and-drop interactions or through the authoring of Python code. The connector tool exemplifies the types of tools in the MIST suite, which we expect will encourage collabora-tive development of applications by allowing users to inte-grate various components and minimizing the cost of de-veloping new user interfaces for the combined compo-nents

Increases in the Irreversibility Field and the Upper Critical Field of Bulk MgB2 by ZrB2 Addition

In a study of the influence of ZrB2 additions on the irreversibility field, Birr and the upper critical field Bc2, bulk samples with 7.5 at. % ZrB2 additions were made by a powder milling and compaction technique. These samples were then heated to 700-900C for 0.5 hours. Resistive transitions were measured at 4.2 K and Birr and Bc2 values were determined. An increase in Bc2 from 20.5 T to 28.6 T and enhancement of Birr from 16 T to 24 T were observed in the ZrB2 doped sample as compared to the binary sample at 4.2 K. Critical field increases similar to those found with SiC doping were seen at 4.2 K. At higher temperatures, increases in Birr were also determined by M-H loop extrapolation and closure. Values of Birr which were enhanced with ZrB2 doping (as compared to the binary) were seen at temperatures up to 34 K, with Birr values larger than those for SiC doped samples at higher temperatures. The transition temperature, Tc, was then measured using DC susceptibility and a 2.5 K drop of the midpoint of Tc was observed. The critical current density was determined using magnetic measurements and was found to increase at all temperatures between 4.2 K and 35 K with ZrB2 doping.Comment: 15 pages, 5 figs, 1 tabl

Scientists in the MIST: Simplifying Interface Design for End Users

We are building a Malleable Interactive Software Toolkit (MIST), a tool set and infrastructure to simplify the design and construction of dynamically-reconfigurable (malleable) interactive software. Malleable software offers the end-user powerful tools to reshape their interactive environment on the fly. We aim to make the construction of such software straightforward, and to make reconfiguration of the resulting systems approachable and manageable to an educated, but non-specialist, user. To do so, we draw on a diverse body of existing research on alternative approaches to user interface (UI) and interactive software construction, including declarative UI languages, constraint-based programming and UI management, reflection and data-driven programming, and visual programming techniques

High-fidelity simulation of an ultrasonic standing-wave thermoacoustic engine with bulk viscosity effects

We have carried out boundary-layer-resolved, unstructured fully-compressible Navier--Stokes simulations of an ultrasonic standing-wave thermoacoustic engine (TAE) model. The model is constructed as a quarter-wavelength engine, approximately 4 mm by 4 mm in size and operating at 25 kHz, and comprises a thermoacoustic stack and a coin-shaped cavity, a design inspired by Flitcroft and Symko (2013). Thermal and viscous boundary layers (order of 10 $\mathrm{\mu}$m) are resolved. Vibrational and rotational molecular relaxation are modeled with an effective bulk viscosity coefficient modifying the viscous stress tensor. The effective bulk viscosity coefficient is estimated from the difference between theoretical and semi-empirical attenuation curves. Contributions to the effective bulk viscosity coefficient can be identified as from vibrational and rotational molecular relaxation. The inclusion of the coefficient captures acoustic absorption from infrasonic ($\sim$10 Hz) to ultrasonic ($\sim$100 kHz) frequencies. The value of bulk viscosity depends on pressure, temperature, and frequency, as well as the relative humidity of the working fluid. Simulations of the TAE are carried out to the limit cycle, with growth rates and limit-cycle amplitudes varying non-monotonically with the magnitude of bulk viscosity, reaching a maximum for a relative humidity level of 5%. A corresponding linear model with minor losses was developed; the linear model overpredicts transient growth rate but gives an accurate estimate of limit cycle behavior. An improved understanding of thermoacoustic energy conversion in the ultrasonic regime based on a high-fidelity computational framework will help to further improve the power density advantages of small-scale thermoacoustic engines.Comment: 55th AIAA Aerospace Sciences Meeting, AIAA SciTech, 201

Transport and magnetic Jc of MgB2 strands and small helical coils

The critical current densities of MgB2 monofilamentary strands with and without SiC additions were measured at 4.2 K. Additionally, magnetic Jc at B = 1 T was measured from 4.2 K to 40 K. Various heat treatment times and temperatures were investigated for both short samples and small helical coils. SiC additions were seen to improve high field transport Jc at 4.2 K, but improvements were not evident at 1 T at any temperature. Transport results were relatively insensitive to heat treatment times and temperatures for both short samples and coils in the 700C to 900C range.Comment: 8 text pages, 1 table, 4 fig