Mitochondrial DNA data indicate an introduction through Mainland Southeast Asia for Australian dingoes and Polynesian domestic dogs

In the late stages of the global dispersal of dogs, dingoes appear in the Australian archaeological record 3500 years BP, and dogs were one of three domesticates brought with the colonization of Polynesia, but the introduction routes to this region remain unknown. This also relates to questions about human history, such as to what extent the Polynesian culture was introduced with the Austronesian expansion from Taiwan or adopted en route, and whether pre-Neolithic Australia was culturally influenced by the surrounding Neolithic world. We investigate these questions by mapping the distribution of the mtDNA founder haplotypes for dingoes (A29) and ancient Polynesian dogs (Arc1 and Arc2) in samples across Southern East Asia (n = 424) and Island Southeast Asia (n = 219). All three haplotypes were found in South China, Mainland Southeast Asia and Indonesia but absent in Taiwan and the Philippines, and the mtDNA diversity among dingoes indicates an introduction to Australia 4600–18 300 years BP. These results suggest that Australian dingoes and Polynesian dogs originate from dogs introduced to Indonesia via Mainland Southeast Asia before the Neolithic, and not from Taiwan together with the Austronesian expansion. This underscores the complex origins of Polynesian culture and the isolation from Neolithic influence of the pre-Neolithic Australian culture

Expansion of a colonial ascidian following consecutive mass coral bleaching at Lizard Island, Australia

Mass coral bleaching is challenging today's coral reefs. However, our understanding of dynamics in benthic space holders, following such disturbances, is limited. To address this, we quantified successional dynamics of the ascidian, Didemnum cf. molle using a series of temporally and spatially matched photoquadrats across both the 2016 and 2017 mass coral bleaching events on the Great Barrier Reef. Unlike corals, D. cf. molle appeared to flourish in the warm temperatures and rapidly expanded. Indeed, colony density increased nearly 6-fold over two years with one quadrat experiencing an increase of over 1000 ind. m⁻². However, this increase did not simply track the increase in space due to coral mortality, but may have benefitted from reduced predation or increased nutrient availability following mass coral mortality. This study highlights the potential for D. cf molle to expand under bleaching conditions and to become a more prominent component of future reef configurations

A 3D perspective on sediment accumulation in algal turfs: implications of coral reef flattening

Globally, coral reefs are being transformed by a suite of stressors, the foremost being climate change. Increasingly, it is expected that these reconfigured reef systems will emerge with lower-complexity and will be dominated by algal turfs. Understanding this new operating space is vital if we are to maintain the services, such as fishable biomass production, that reefs provide. However, the functionality of these systems appears to depend on the nature of the algal turfs themselves, which is in-turn, intimately linked to the sediments they contain. As reefs are losing complexity, we need to understand if, and to what extent, algal turf condition and complex reef structure are connected. To address this issue we took advantage of recent developments in 3D structure-from-motion technology to examine how complexity metrics (elevation and surface angle) related to the nature of algal turfs on a heavily climate-impacted coral reef. This represents a novel application of this technology in the context of coral reef ecosystems. We found that as both elevation and surface angle decreased, the nutritional value of the epilithic algal matrix also decreased while sediment accumulation increased. Furthermore, we showed that elevated surfaces were characterized by far shorter algal turfs, and are potentially herbivory hotspots, offering fertile grounds for further exploration of herbivory dynamics at sub-metre spatial scales. Synthesis. This study yields new insights into the operating-space of future reefs, and suggests that as reefs flatten, sediment accumulation is likely to increase even if sediment inputs remain unchanged, altering algal turfs fundamentally. Maintaining key services provided by climate-transformed, low-complexity algal turf-dominated reefs of the future, will depend on managing the complex interactions between herbivory, sediments, algal turfs and reef structural complexity

The role of nocturnal fishes on coral reefs: A quantitative functional evaluation

The ecological functions of nocturnal coral reef fishes are poorly known. Yet, nocturnal resources for coral reef consumers are theoretically as abundant and productive, if not more so, than their diurnal counterparts. In this study, we quantify and contrast the energetic dynamics of nocturnal and diurnal fishes in a model coral reef ecosystem, evaluating whether they attain similar levels of biomass production. We integrated a detailed dataset of coral reef fish counts, comprising diurnal and nocturnal species, in sites sheltered and exposed to wave action. We combined somatic growth and mortality models to estimate rates of consumer biomass production, a key ecosystem function. We found that diurnal fish assemblages have a higher biomass than nocturnal fishes: 104% more in sheltered sites and 271% more in exposed sites. Differences in productivity were even more pronounced, with diurnal fishes contributing 163% more productivity in sheltered locations, and 558% more in exposed locations. Apogonidae dominated biomass production within the nocturnal fish assemblage, comprising 54% of total nocturnal fish productivity, which is proportionally more than any diurnal fish family. The substantially lower contributions of nocturnal fishes to biomass and biomass production likely indicate constraints on resource accessibility. Taxa that overcome these constraints may thrive, as evidenced by apogonids. This study highlights the importance of nocturnal fishes in underpinning the flow of energy and nutrients from nocturnal resources to reef communities; a process driven mainly by small, cryptic fishes

The role of the reef flat in coral reef trophodynamics: past, present, and future

The reef flat is one of the largest and most distinctive habitats on coral reefs, yet its role in reef trophodynamics is poorly understood. Evolutionary evidence suggests that reef flat colonization by grazing fishes was a major innovation that permitted the exploitation of new space and trophic resources. However, the reef flat is hydrodynamically challenging, subject to high predation risks and covered with sediments that inhibit feeding by grazers. To explore these opposing influences, we examine the Great Barrier Reef (GBR) as a model system. We focus on grazing herbivores that directly access algal primary productivity in the epilithic algal matrix (EAM). By assessing abundance, biomass, and potential fish productivity, we explore the potential of the reef flat to support key ecosystem processes and its ability to maintain fisheries yields. On the GBR, the reef flat is, by far, the most important habitat for turf‐grazing fishes, supporting an estimated 79% of individuals and 58% of the total biomass of grazing surgeonfishes, parrotfishes, and rabbitfishes. Approximately 59% of all (reef‐wide) turf algal productivity is removed by reef flat grazers. The flat also supports approximately 75% of all grazer biomass growth. Our results highlight the evolutionary and ecological benefits of occupying shallow‐water habitats (permitting a ninefold population increase). The acquisition of key locomotor and feeding traits has enabled fishes to access the trophic benefits of the reef flat, outweighing the costs imposed by water movement, predation, and sediments. Benthic assemblages on reefs in the future may increasingly resemble those seen on reef flats today, with low coral cover, limited topographic complexity, and extensive EAM. Reef flat grazing fishes may therefore play an increasingly important role in key ecosystem processes and in sustaining future fisheries yields

Indo-Pacific biodiversity of coral Rreefs: deviations from a mid-domain model

Understanding the nature and causes of global gradients in species richness is a perennial ecological problem, and recent work has highlighted the need to assess these gradients relative to an appropriate statistical expectation. This paper examines latitudinal and longitudinal gradients in species richnesses of corals and reef fishes in the Indo-Pacific domain and compares them with gradients predicted by a mid-domain model in which geographic domains are located at random between the latitudinal and longitudinal boundaries of this region. We test for significant differences between observed and predicted species-richness patterns, and we identify regions that are enriched or depauperate in species, relative to expectation. In addition, we move beyond previous mid-domain analyses by directly comparing observed spatial distributions of geographic ranges with those predicted by a mid-domain model. This comparison indicates precisely how species-richness anomalies are produced by nonrandomness in the distribution of species ranges. For both corals and fishes, large and statistically significant differences exist between observed latitudinal and longitudinal species-richness gradients and those predicted by mid-domain models. Longitudinally, species richness is markedly higher than predicted along the African coast and, to a lesser extent, within the Indo-Australian Archipelago (IAA), and it is markedly lower than expected in the eastern Pacific. Latitudinally, species richness becomes increasingly higher than predicted as one moves from the equator to the tropical margins; then it becomes sharply lower than predicted beyond the tropics. Unexpectedly, differences between observed and predicted spatial distributions of range endpoints and midpoints reveal a pattern of nonrandomness that is highly congruent with the hypothesis that gyres in the Indian and Pacific Oceans, with the IAA forming a porous boundary between them, have a major influence on Indo-Pacific species-richness patterns. Our analyses indicate that the perspective offered by a focus on explaining nonrandomness in the location of geographic ranges (rather than explaining why species numbers vary in space) is likely to dramatically alter our assessments of alternative explanations for global species-richness gradients

A unified model explains commonness and rarity on coral reefs

Abundance patterns in ecological communities have important implications for biodiversity maintenance and ecosystem functioning. However, ecological theory has been largely unsuccessful at capturing multiple macroecological abundance patterns simultaneously. Here, we propose a parsimonious model that unifies widespread ecological relationships involving local aggregation, species-abundance distributions, and species associations, and we test this model against the metacommunity structure of reef-building corals and coral reef fishes across the western and central Pacific. For both corals and fishes, the unified model simultaneously captures extremely well local species-abundance distributions, interspecific variation in the strength of spatial aggregation, patterns of community similarity, species accumulation, and regional species richness, performing far better than alternative models also examined here and in previous work on coral reefs. Our approach contributes to the development of synthetic theory for large-scale patterns of community structure in nature, and to addressing ongoing challenges in biodiversity conservation at macroecological scales

Small coral reef fishes with large ecological footprints

Seascape connectivity can facilitate key ecosystem functions in complex ecosystems like coral reefs. Many reef fishes move across the seascape, bridging different ecosystems. However, their role in shaping important functions, such as biomass production and nutrient cycling, is still poorly understood. This study, therefore, assesses the extent of natural movements of cardinalfishes (Apogonidae), one of the major contributors to nocturnal fish biomass production with the potential for a major role in transferring energy and nutrients between sandy ecosystems and adjacent coral reefs. Consistent with previous work, showing their ability to move distances of 100 s to 1000 s of metres when displaced, we reveal that these small fishes undergo major voluntary nocturnal foraging forays extending up to at least 145 m from reef structures. Their estimated daily movement distances are at least 430 times greater than expected based solely on body size-home range expectations. Given their large travel distances and strong homing abilities, apogonids may provide a major conduit for material transfer between lagoonal soft sediment habitats and adjacent coral reefs. These results highlight the potential importance of apogonids in the cross-system or cross-habitat transport of energy and nutrients on coral reefs

Young fishes persist despite coral loss on the Great Barrier Reef

Unprecedented global bleaching events have led to extensive loss of corals. This is expected to lead to extensive losses of obligate coral-dependent fishes. Here, we use a novel, spatially-matched census approach to examine the nature of fish-coral dependency across two mass coral bleaching events. Despite a >40% loss of coral cover, and the ecological extinction of functionally important habitat-providing Acropora corals, we show that populations of obligate coral-dependent fishes, including Pomacentrus moluccensis, persisted and – critically – recruitment was maintained. Fishes used a wide range of alternate reef habitats, including other coral genera and dead coral substrata. Labile habitat associations of 'obligate' coral-dependent fishes suggest that recruitment may be sustained on future reefs that lack Acropora, following devastating climatic disturbances. This persistence without Acropora corals offers grounds for cautious optimism; for coral-dwelling fishes, corals may be a preferred habitat, not an obligate requirement

Spatial mismatch in fish and coral loss following 2016 mass coral bleaching

Record-breaking temperatures between 2015 and 2016 led to unprecedented pan-tropical bleaching of scleractinian corals. On the Great Barrier Reef (GBR), the effects were most pronounced in the remote, northern region, where over 90% of reefs exhibited bleaching. Mass bleaching that results in widespread coral mortality represents a major disturbance event for reef organisms, including reef fishes. Using 133 replicate 1 m(2) quadrats, we quantified short-term changes in coral communities and spatially associated reef fish assemblages, at Lizard Island, Australia, in response to the 2016 mass bleaching event. Quadrats were spatially matched, permitting repeated sampling of fish and corals in the same areas: before, during and 6 months after mass bleaching. As expected, we documented a significant decrease in live coral cover. Subsequent decreases in fish abundance were primarily driven by coral-associated damselfishes. However, these losses, were relatively minor (37% decrease), especially compared to the magnitude of Acropora loss (>95% relative decrease). Furthermore, at a local, 1 m(2) scale, we documented a strong spatial mismatch between fish and coral loss. Post-bleaching fish losses were not highest in quadrats that experienced the greatest loss of live coral. Nor were fish losses associated with a proliferation of cyanobacteria. Several sites did, however, exhibit increases in fish abundance suggesting substantial spatial movements. These results challenge common assumptions and emphasize the need for caution when ascribing causality to observed patterns of fish loss at larger spatial scales. Our results highlight the potential for short-term resilience to climate change, in fishes, through local migration and habitat plasticity. (C) 2018 Elsevier B.V. All rights reserved