Summary of patient metadata for 63 patients included in the study.

<p>Summary of patient metadata for 63 patients included in the study.</p

Maximum likelihood phylogeny of <i>Mtb</i> isolated from patients with active pulmonary TB.

<p>Branches are coloured by lineage and tips are coloured by the sub-clades within the lineages. A star marks almost identical genomes (<3 SNVs difference) isolated from different patients. Adjacent data links strains to patient metadata: MDR and pre-XDR status, treatment status, HIV status, sex and recruitment site and date of sample reception.</p

Summary of the prevalence of MDR within the different clades among 63 patients.

<p>Summary of the prevalence of MDR within the different clades among 63 patients.</p