Random networks of cross-linked directed polymers

We explore the effect of random permanent cross-links on a system of directed polymers confined between two planes with their end-points free to slide on them. We treat the cross-links as quenched disorder and we use a semimicroscopic replica field theory to study the structure and elasticity of this system. Upon increasing the cross-link density, we get a continuous gelation transition signaled by the emergence of a finite in-plane localization length. The distribution of localization length turns out to depend on the height along the preferred direction of the directed polymers. The gelation transition also gives rise to a finite in-plane shear modulus which we calculate and turns out to be universal, i.e., independent of the energy and length scales of the polymers and the cross-links. Using a symmetry argument, we show that cross-links of negligible extent along the preferred axis of the directed polymers do not cause any renormalization to the tilt modulus of the uncross-linked system.Comment: 7 pages, 3 figure

Anisotropic Random Networks of Semiflexible Polymers

Motivated by the organization of crosslinked cytoskeletal biopolymers, we present a semimicroscopic replica field theory for the formation of anisotropic random networks of semiflexible polymers. The networks are formed by introducing random permanent crosslinks which fix the orientations of the corresponding polymer segments to align with one another. Upon increasing the crosslink density, we obtain a continuous gelation transition from a fluid phase to a gel where a finite fraction of the system gets localized at random positions. For sufficiently stiff polymers, this positional localization is accompanied by a {\em continuous} isotropic-to-nematic (IN) transition occuring at the same crosslink density. As the polymer stiffness decreases, the IN transition becomes first order, shifts to a higher crosslink density, and is preceeded by an orientational glass (statistically isotropic amorphous solid) where the average polymer orientations freeze in random directions.Comment: 5 pages, 2 figures; final version with expanded discussion to appear in PR

Bimodality in the transverse fluctuations of a grafted semiflexible polymer and the diffusion-convection analogue: An effective-medium approach

Recent Monte Carlo simulations of a grafted semiflexible polymer in 1+1 dimensions have revealed a pronounced bimodal structure in the probability distribution of the transverse (bending) fluctuations of the free end, when the total contour length is of the order of the persistence length G. Lattanzi , Phys. Rev E 69, 021801 (2004)]. In this paper, we show that the emergence of bimodality is related to a similar behavior observed when a random walker is driven in the transverse direction by a certain type of shear flow. We adapt an effective-medium argument, which was first introduced in the context of the sheared random-walk problem E. Ben-Naim , Phys. Rev. A 45, 7207 (1992)], in order to obtain a simple analytic approximation of the probability distribution of the free-end fluctuations. We show that this approximation captures the bimodality and most of the qualitative features of the free-end fluctuations. We also predict that relaxing the local inextensibility constraint of the wormlike chain could lead to the disappearence of bimodality

Bundle formation in parallel aligned polymers with competing interactions

Aggregation of like-charged polymers is widely observed in biological and soft matter systems. In many systems, bundles are formed when a short-range attraction of diverse physical origin like charge-bridging, hydrogen-bonding or hydrophobic interaction, overcomes the longer- range charge repulsion. In this Letter, we present a general mechanism of bundle formation in these systems as the breaking of the translational invariance in parallel aligned polymers with competing interactions of this type. We derive a criterion for finite-sized bundle formation as well as for macroscopic phase separation (formation of infinite bundles).Comment: accepted for publication in Europhys Let

Bundling in brushes of directed and semiflexible polymers

We explore the effect of an attractive interaction between parallel-aligned polymers, which are perpendicularly grafted on a substrate. Such an attractive interaction could be due to, e.g., reversible cross-links. The competition between permanent grafting favoring a homogeneous state of the polymer brush and the attraction, which tends to induce in-plane collapse of the aligned polymers, gives rise to an instability of the homogeneous phase to a bundled state. In this latter state the in-plane translational symmetry is spontaneously broken and the density is modulated with a finite wavelength, which is set by the length scale of transverse fluctuations of the grafted polymers. We analyze the instability for two models of aligned polymers: directed polymers with a line tension and weakly bending chains with a bending stiffness.Comment: 7 pages, 5 figures, final version as published in PR

Fully Integrated Hydrocarbon Reservoir Studies: Myth or Reality?

Abstract: Problem statement: In the petroleum industry and especially during reservoir studies, data coming from different disciplines must be combined in order to generate a model that is representative of the reservoir being studied and can be used for defining the most viable development strategy of the field from both an economic and technical standpoint. Each of these disciplines represents an independent piece of a puzzle that is solved by professionals from various scientific fields who have different educational backgrounds. Integration among geophysics, geology, fluid dynamics and geomechanics is truly essential, but requires specific approaches and procedures for generating and calibrating a reservoir model capable of dealing with all and each of these aspects. Approach: Independent workflows were examined for each of the disciplines involved so as to highlight unavoidable interdependencies between static, dynamic and geomechanical models, even when the goal is to tackle each issue separately. Then, the traditional working method was compared to the integrated approach that supports the generation and calibration of models based on data and interpretation results from all the disciplines involved in the entire project. Results: The Construction of a reservoir model should be regarded as a dynamic process, subject to repeated updates as new data is made available and by frequent modifications when inconsistencies are found between the understanding that different specialists have of the same system. This approach has exhibited great advantages in terms of improvement in the quality and flexibility of the model, reduction of working time and generation of a single final model that can be adapted or used for any kind of simulation problem. Conclusion: An integrated approach is necessary for reservoir modeling purposes. Modern reservoir studies should be designed accordingly to permit the full integration of static, dynamic and geomechanical data into a single reservoir model. Integration is always beneficial, even though there still remains a misconception that it is not needed at all times. For this reason, it is recommended that an effort is made to set up a model capable to handle all aspects of a reservoir study each time a new field study is undertaken, even when it is not envisioned that all aspects might be of interest in the futur

Mechanical properties of branched actin filaments

Cells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures. We investigate the force-extension relation of branched filaments, grafted on an elastic structure at one end and pushing with the free ends against the leading edge cell membrane. Single filaments are modeled as worm-like chains, whose thermal bending fluctuations are restricted by the leading edge cell membrane, resulting in an effective force. Branching can increase the stiffness considerably; however the effect depends on branch point position and filament orientation, being most pronounced for intermediate tilt angles and intermediate branch point positions. We describe filament networks without cross-linkers to focus on the effect of branching. We use randomly positioned branch points, as generated in the process of treadmilling, and orientation distributions as measured in lamellipodia. These networks reproduce both the weak and strong force response of lamellipodia as measured in force-velocity experiments. We compare properties of branched and unbranched networks. The ratio of the network average of the force per branched filament to the average force per unbranched filament depends on the orientation distribution of the filaments. The ratio exhibits compression dependence and may go up to about 4.5 in networks with a narrow orientation distribution. With orientation distributions measured in lamellipodia, it is about two and essentially independent from network compression, graft elasticity and filament persistence length