Farmland biodiversity monitoring through citizen science: A review of existing approaches and future opportunities

Biodiversity monitoring in agricultural landscapes is important for assessing the effects of both land use change and activities that influence farmland biodiversity. Despite a considerable increase in citizen science approaches to biodiversity monitoring in recent decades, their potential in farmland-specific contexts has not been systematically examined. This paper therefore provides a comprehensive review of existing citizen science approaches involving biodiversity monitoring on farmland. Using three complementary methods, we identify a range of programmes at least partially covering farmland. From these, we develop a typology of eight programme types, reflecting distinctions in types of data collected and nature of volunteer involvement, and highlight their respective strengths and limitations. While all eight types can make substantial contributions to farmland biodiversity monitoring, there is considerable scope for their further development-particularly through increased engagement of farmers, for whom receiving feedback on the effects of their own practices could help facilitate adaptive management

Modeling of Pompe Disease using Induced Pluripotent Stem Cells for the Development of Novel Therapies

The modeling of human disorders is often performed using heterologous cells or mouse models. Human and cell type-specific models will help in a better understanding of cellular pathology, provide a platform for high throughput screening and might provide proof of principle studies for regenerative therapy. The aim of this thesis is to generate an induced pluripotent stem cell model for Pompe Disease and use this model for the investigation of molecular mechanisms and the development of novel therapies

Live bedside music in daily clinical practice of a surgical hospital ward among older patients:A controlled study design of an innovative practice

OBJECTIVE: There is an increasing interest in the role of the arts, particularly music, in healthcare. Music seems an attractive non-pharmacological intervention for older patients to improve postoperative outcomes. Although live music elicits more meaningful responses from an audience than recorded music, the use of live music is still rare on hospital wards. In view of the positive effects of recorded music on older surgical patients, we designed, in collaboration with a conservatoire, an innovative practice named Meaningful Music in Health Care (MiMiC). The aim is to determine whether live bedside music implements into daily practice and allows improves patient outcomes. METHOD: This manuscript provides an overview of a trial evaluating if live bedside music can improve postoperative outcomes in older patients. The MiMiC initiative is a non randomized controlled trial study among older surgical patients on three hospital wards. Live bedside music is performed by professional musicians, once a day for six or seven consecutive days. The primary outcome is experienced pain; secondary outcomes are anxiety, relaxation and physical parameters (heart rate, heart rate variability, blood pressure, respiratory rate and oxygenation). Measurements of these variables are collected before the intervention, 30 min afterwards and again after three hours. Daily evaluations determine whether this innovative practice can be implemented in daily practice. CONCLUSION: This manuscript describes a new practice, live bedside music by professional musicians, on surgical hospital wards aiming to improve patient outcomes. It offers a new field of interprofessional collaboration for the benefit of patients. Further research must be conducted focussing on patient outcomes, including cost-effectiveness and the experiences of patients and healthcare professionals

OR and simulation in combination for optimization

This chapter aims to promote and illustrate the fruitful combination of classical Operations Research (OR) and Computer Simulation. First, a highly instructive example of parallel queues will be studied. This simple example already shows the necessary combination of OR (queueing) and simulation that appears to be of practical interest such as for call center optimization. Next, two more ’real life’ applications are regarded:\ud - blood platelet production and inventory management at blood banks, and \ud - train conflict resolution for railway junctions.\ud Both applications show the useful combination of Simulation and optimization methods from OR, in particular Stochastic Dynamic Programming (SDP) and Markov decision theory (MDP), to obtain simple rules that are nearly optimal. The results are based on real life Dutch case studies and show that this combined OR-Simulation approach can be most useful for ’practical optimization’ and that it is still wide open for further application

Antisense Oligonucleotides Promote Exon Inclusion and Correct the Common c.-32-13T>G GAA Splicing Variant in Pompe Disease

The most common variant causing Pompe disease is c.-32-13T>G (IVS1) in the acid α-glucosidase (GAA) gene, which weakens the splice acceptor of GAA exon 2 and induces partial and complete exon 2 skipping. It also allows a low level of leaky wild-type splicing, leading to a childhood/adult phenotype. We hypothesized that cis-acting splicing motifs may exist that could be blocked using antisense oligonucleotides (AONs) to promote exon inclusion. To test this, a screen was performed in patient-derived primary fibroblasts using a tiling array of U7 small nuclear RNA (snRNA)-based AONs. This resulted in the identification of a splicing regulatory element in GAA intron 1. We designed phosphorodiamidate morpholino oligomer-based AONs to this element, and these promoted exon 2 inclusion and enhanced GAA enzyme activity to levels above the disease threshold. These results indicate that the common IVS1 GAA splicing variant in Pompe disease is subject to negative regulation, and inhibition of a splicing regulatory element using AONs is able to restore canonical GAA splicing and endogenous GAA enzyme activity

Thrombus characteristics evaluated by acute optical coherence tomography in ST elevation myocardial Infarction

Aims ST elevation myocardial infarction (STEMI) is caused by an occlusive thrombosis of a coronary artery. We wanted to assess if the thrombus can be characterized according to erythrocyte content and age using intravascular optical coherence tomography (OCT) in a clinical setting. Methods and results We performed manual thrombus aspiration in 66 STEMI patients. OCT was done of the thrombus remnants after aspiration. A light intensity ratio was measured through the thrombus. Forty two of the aspirates had thrombus which could be analyzed histomorphologically for analysis of erythrocyte and platelet content, and to determine the age of thrombus as fresh, lytic or organized. There were 11 red, 21 white and 10 mixed thrombi. Furthermore, 36 aspirates had elements of fresh, 7 of lytic and 8 of organized thrombi. There was no correlation between colour and age. OCT appearance could not predict erythrocyte or platelet content. The light intensity ratios were not significantly different in fresh, lytic or organized thrombi. Conclusion OCT could not differentiate between red and white thrombi, nor determine thrombus age.publishedVersio

Mangrove forest drag and bed stabilisation effects on intertidal flat morphology

Mangrove trees influence their physical environment by exerting drag on tidal flows and waves while also stabilising the sediment bed of intertidal flats. These processes influence sediment accretion, the mangrove habitat and their resilience to sea level rise. However, little is known about the magnitude and spatial extent of the effects of mangrove forests on sediment transport and the morphology of the intertidal flat. We use manipulated simulations with an extended process-based numerical model, to study the influence of mangrove forests on intertidal flat morphology on a yearly timescale. The model includes the influence of mangrove trees on tidal flows, waves and sediment dynamics. The model is calibrated and validated with a comprehensive set of measurement data including hydrodynamics, sediment transport and morphological processes from an expanding mangrove forest in the sediment-rich Firth of Thames estuary in Aotearoa New Zealand. Sediment accretion on the upper intertidal flat is predominantly influenced by the characteristic morphology of the established mangrove forest, with increased bed stability at higher mudflat elevations related to prolonged aerial exposure and drying of the bed. Our results show that, in comparison to the situation without mangroves, sediment accretion increases in the most seaward fringe area of the forest. The unvegetated intertidal flat fronting the mangrove forest captures less sediment compared to the situation without mangroves. The mangrove forest drag triggers the development of a steeper, convex-up-shaped, upper intertidal flat profile, especially during periods with higher water levels and waves. These effects are expected to influence the development and storm-recovery of natural and restored mangrove forests and may contribute to the resilience and persistence of mangrove-vegetated intertidal flats for coastal flood risk reduction.</p

Real-time and Multichannel Measurement of Contractility of hiPSC-Derived 3D Skeletal Muscle using Fiber Optics-Based Sensing

As the field of cardiac and skeletal muscle tissue engineering expands, so does the need for accurate and reliable systems to generate in vitro 3D tissues and analyze their functional properties. In this study, the Cuore is introduced, a system that integrates sensors based on optical fibers and uses the principle of light interferometry to detect the contraction of 3D Tissue Engineered Skeletal Muscles (3D-TESMs). The technology employed in the Cuore allows for reproducible and multichannel force measurements down to a nano-Newtons resolution while maintaining sterility and permitting continuous non-invasive recording within and outside standard tissue culture incubators. Thanks to the integrated electrodes for electrical pulse stimulation (EPS), 3D-TESMs generated from three independent hiPSC-derived myogenic progenitors (MPs) lines are stimulated and the contractility is recorded over the course of a week. Through the modulation of different EPS parameters, the optimal combination to induce the 3D-TESMs in producing fully fused tetani without causing damage is determined. Furthermore, 3D-TESMs from different lines exhibit characteristic signatures of spontaneous contractility and response to caffeine, verapamil, and the β-agonist clenbuterol. The ease of use, high sensitivity, and the integrated electrodes and sensors make the Cuore an ideal technology to investigate the biology of contractile tissues and their response to drugs.</p

GAA Deficiency in Pompe Disease Is Alleviated by Exon Inclusion in iPSC-Derived Skeletal Muscle Cells

Pompe disease is a metabolic myopathy caused by deficiency of the acid α-glucosidase (GAA) enzyme and results in progressive wasting of skeletal muscle cells. The c.-32-13T>G (IVS1) GAA variant promotes exon 2 skipping during pre-mRNA splicing and is the most common variant for the childhood/adult disease form. We previously identified antisense oligonucleotides (AONs) that promoted GAA exon 2 inclusion in patient-derived fibroblasts. It was unknown how these AONs would affect GAA splicing in skeletal muscle cells. To test this, we expanded induced pluripotent stem cell (iPSC)-derived myogenic progenitors and differentiated these to multinucleated myotubes. AONs restored splicing in myotubes to a similar extent as in fibroblasts, suggesting that they act by modulating the action of shared splicing regulators. AONs targeted the putative polypyrimidine tract of a cryptic splice acceptor site that was part of a pseudo exon in GAA intron 1. Blocking of the cryptic splice donor of the pseudo exon with AONs likewise promoted GAA exon 2 inclusion. The simultaneous blocking of the cryptic acceptor and cryptic donor sites restored the majority of canonical splicing and alleviated GAA enzyme deficiency. These results highlight the relevance of cryptic splicing in human disease and its potential as therapeutic target for splicing modulation using AONs