Building on piles in floodplains

Last year in the Netherlands 15 locations were allocated along the Rhine branches where – under strong restrictions - it was allowed to build in floodplains. Building in floodplains may lead to a water level rise during floods and moreover, the river bed morphology may be disturbed (erosion/sedimentation). A potential building location on a floodplain of the river IJssel near Deventer (Wilpsche Klei) is used as a fictitious case to investigate these processes

Effects of electrostatic screening on the conformation of single DNA molecules confined in a nanochannel

Single T4-DNA molecules were confined in rectangular-shaped channels with a depth of 300 nm and a width in the range 150-300 nm casted in a poly(dimethylsiloxane) nanofluidic chip. The extensions of the DNA molecules were measured with fluorescence microscopy as a function of the ionic strength and composition of the buffer as well as the DNA intercalation level by the YOYO-1 dye. The data were interpreted with scaling theory for a wormlike polymer in good solvent, including the effects of confinement, charge, and self-avoidance. It was found that the elongation of the DNA molecules with decreasing ionic strength can be interpreted in terms of an increase of the persistence length. Self-avoidance effects on the extension are moderate, due to the small correlation length imposed by the channel cross-sectional diameter. Intercalation of the dye results in an increase of the DNA contour length and a partial neutralization of the DNA charge, but besides effects of electrostatic origin it has no significant effect on the bare bending rigidity. In the presence of divalent cations, the DNA molecules were observed to contract, but they do not collapse into a condensed structure. It is proposed that this contraction results from a divalent counterion mediated attractive force between the segments of the DNA molecule.Comment: 38 pages, 10 figures, accepted for publication in The Journal of Chemical Physic

Encapsulation of DNA by cationic diblock copolymer vesicles

Encapsulation of dsDNA fragments (contour length 54 nm) by the cationic diblock copolymer poly(butadiene-b-N-methyl 4-vinyl pyridinium) [PBd-b-P4VPQ] has been studied with phase contrast, polarized light, and fluorescence microscopy, as well as scanning electron microscopy. Encapsulation was achieved with a single emulsion technique. For this purpose, an aqueous DNA solution is emulsified in an organic solvent (toluene) and stabilized by the amphiphilic diblock copolymer. The PBd block forms an interfacial brush, whereas the cationic P4VPQ block complexes with DNA. A subsequent change of the quality of the organic solvent results in a collapse of the PBd brush and the formation of a capsule. Inside the capsules, the DNA is compacted as shown by the appearance of birefringent textures under crossed polarizers and the increase in fluorescence intensity of labeled DNA. The capsules can also be dispersed in aqueous medium to form vesicles, provided they are stabilized with an osmotic agent (polyethylene glycol) in the external phase. It is shown that the DNA is released from the vesicles once the osmotic pressure drops below 105 N/m2 or if the ionic strength of the supporting medium exceeds 0.1 M. The method has also proven to be efficient to encapsulate pUC18 plasmid in sub-micron sized vesicles and the general applicability of the method has been demonstrated by the preparation of the charge inverse system: cationic poly(ethylene imine) encapsulated by the anionic diblock poly(styrene-b-acrylic acid).Comment: 35 pages, 11 figures, accepted for publication in Langmui

Anaerobic degradation of dimethylsulfoniopropionate to 3-S-methylmercaptopropionate by a marine Desulfobacterium strain

Dimethylsulfoniopropionate, an osmolyte of marine algae, is thought to be the major precursor of dimethyl sulfide, which plays a dominant role in biogenic sulfur emission. The marine sulfate-reducing bacterium Desulfobacterium strain PM4 was found to degrade dimethylsulfoniopropionate to 3-S-methylmercaptopropionate. The oxidation of one of the methyl groups of dimethylsulfoniopropionate was coupled to the reduction of sulfate; this process is similar to the degradation of betaine to dimethylglycine which was described earlier for the same strain. Desulfobacterium PM4 is the first example of an anaerobic marine bacterium that is able to demethylate dimethylsulfoniopropionate.

Scoping review of health promoting qualities of cultural heritage sites : theoretical analysis and development

Today, research and theories about health promoting environments often describes how and why certain environments are more qualified than others to support health outcomes. The environments that are suggested to possess these health promoting qualities are in most cases characterized by the presence of natural elements. But seeing how the world consists of so many types of places with various distinctive features, the possibility of other forms of health bringing qualities must exist. And given the fact that new, alternative methods are needed to deal with the increase in modern day public health issues, other forms of environments should be examined. This work tries to account for this knowledge gap by exploring and investigating the health promoting qualities of cultural heritage sites. Cultural heritage sites have been shown in previous research to possess some qualities that might support health and well-being but have not been investigated thoroughly. A scoping review was therefore applied to identify factors in existing research of cultural heritage sites that could indicate some form of healthrelated process. Then, current theories of environmental psychology and health, related to the reviewed research were broken down and analyzed in relation to what type of mechanisms and dimensions lies behind them. Finally, a synthesis was made of the different thematic factors and a new theoretical framework is proposed, describing how cultural heritage sites can be used and further studied as health promoting environments