Looking Back at the Gifi System of Nonlinear Multivariate Analysis

Gifi was the nom de plume for a group of researchers led by Jan de Leeuw at the University of Leiden. Between 1970 and 1990 the group produced a stream of theoretical papers and computer programs in the area of nonlinear multivariate analysis that were very innovative. In an informal way this paper discusses the so-called Gifi system of nonlinear multivariate analysis, that entails homogeneity analysis (which is closely related to multiple correspondence analysis) and generalizations. The history is discussed, giving attention to the scientific philosophy of this group, and links to machine learning are indicated

Liana infestation impacts tree growth in a lowland tropical moist forest

Ecosystem-level estimates of the effect of lianas on tree growth in mature tropical forests are needed to evaluate the functional impact of lianas and their potential to affect the ability of tropical forests to sequester carbon, but these are currently lacking. Using data collected on tree growth rates, local growing conditions and liana competition in five permanent sampling plots in Amazonian Peru, we present the first ecosystem-level estimates of the effect of lianas on above-ground productivity of trees. By first constructing a multi-level linear mixed effect model to predict individual-tree diameter growth model using individual-tree growth conditions, we were able to then estimate stand-level above-ground biomass (AGB) increment in the absence of lianas. We show that lianas, mainly by competing above-ground with trees, reduce tree annual above-ground stand-level biomass increment by ~10%, equivalent to 0.51 Mg dry weight ha<sup>−1</sup> yr<sup>−1</sup> or 0.25 Mg C ha<sup>−1</sup> yr<sup>−1</sup>. AGB increment of lianas themselves was estimated to be 0.15 Mg dry weight ha<sup>−1</sup> yr<sup>−1</sup> or 0.07 Mg C ha<sup>−1</sup> yr<sup>−1</sup>, thus only compensating ~29% of the liana-induced reduction in ecosystem AGB increment. Increasing liana pressure on tropical forests will therefore not only tend to reduce their carbon storage capacity, by indirectly promoting tree species with low-density wood, but also their rate of carbon uptake, with potential consequences for the rate of increase in atmospheric carbon dioxide

The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application

Mycorrhizal symbioses between plants and fungi are vital for the soil structure, nutrient cycling, plant diversity, and ecosystem sustainability. More than 250 000 plant species are associated with mycorrhizal fungi. Recent advances in genomics and related approaches have revolutionized our understanding of the biology and ecology of mycorrhizal associations. The genomes of 250+ mycorrhizal fungi have been released and hundreds of genes that play pivotal roles in regulating symbiosis development and metabolism have been characterized. rDNA metabarcoding and metatranscriptomics provide novel insights into the ecological cues driving mycorrhizal communities and functions expressed by these associations, linking genes to ecological traits such as nutrient acquisition and soil organic matter decomposition. Here, we review genomic studies that have revealed genes involved in nutrient uptake and symbiosis development, and discuss adaptations that are fundamental to the evolution of mycorrhizal lifestyles. We also evaluated the ecosystem services provided by mycorrhizal networks and discuss how mycorrhizal symbioses hold promise for sustainable agriculture and forestry by enhancing nutrient acquisition and stress tolerance. Overall, unraveling the intricate dynamics of mycorrhizal symbioses is paramount for promoting ecological sustainability and addressing current pressing environmental concerns. This review ends with major frontiers for further research

Forceless Sadowsky strips are spherical

We show that thin rectangular ribbons, defined as energy-minimising configurations of the Sadowsky functional for narrow developable elastic strips, have a propensity to form spherical shapes in the sense that forceless solutions lie on a sphere. This has implications for ribbonlike objects in (bio)polymer physics and nanoscience that cannot be described by the classical wormlike chain model. A wider class of functionals with this property is identified.Comment: 15 pages, 4 figure

On estimating the size of overcoverage with the latent class model. A critique of the paper "Population Size Estimation Using Multiple Incomplete Lists with Overcoverage" by di Cecco, di Zio, Filipponi and Rocchetti (2018, JOS 34 557-572)

We read with interest the article by di Cecco et al. (2018), but have reservations about the usefulness of the latent class model specifically for estimating overcoverage. In particular, we question the interpretation of the parameters of the fitted latent class model.Comment: 5 page