6 research outputs found
Image2_Pan-cancer analysis of the prognostic and immunological role of Fanconi anemia complementation group E.JPEG
Fanconi anemia (FA) genes contribute to tumorigenesis by regulating DNA repair. Despite its importance for assembly and functionality of the FA core complex, no pan-cancer analysis of FANCE was performed. We aimed to provide a comprehensive understanding of the role of FANCE in cancers. Based on The Cancer Genome Atlas (TCGA), Cancer Cell Line Encyclopedia (CCLE), Genotype Tissue-Expression (GTEx), Human Protein Atlas (HPA), Gene Expression Omnibus (GEO), and Cancer Single-cell Atlas (CancerSEA) databases, we investigated the carcinogenicity of FANCE using various bioinformatics methods, including FANCE expression and prognosis, immune invasion, tumor mutation burden, microsatellite instability, and neoantigens. We monitored Fance mutations in mice that caused tumorigenesis. FANCE expression and activity scores were upregulated in 15 and 21 cancers. High expression of FANCE affected shorter overall survival (OS) in seven cancers and longer overall survival in three cancers. It was correlated with shorter overall survival and progression-free interval (PFI) in endometrial cancer and longer overall survival and PFI in cervical cancer. FANCE expression negatively correlated with stromal/immune scores in 21 cancers including cervical cancer, endometrial cancer, and ovarian cancer. FANCE expression negatively correlated with CD8 T cells in endometrial cancer and positively correlated with M1 macrophages in cervical cancer, possibly related to cancer prognosis. FANCE positively correlated with immune checkpoint inhibitors PD-1, PD-L1, and CTLA4 in endometrial cancer and ovarian cancer. FANCE expression positively correlated with microsatellite instability, tumor mutational burden, and neoantigens in 7, 22, and five cancers, especially in endometrial cancer, potentially increasing the effectiveness of immunotherapy. Single-cell sequencing data showed FANCE was primarily expressed in cancer cells in cervical and ovarian cancer, and in fibroblasts in endometrial cancer. Fance heterozygous mutant mice had increased tumor incidences and shorter overall survival and tumor-free survival (TFS) than Fance homozygous mutant mice and wild-type mice. Conclusively, FANCE potential to serve as a biomarker for cancer prognosis and may predict cancer immunotherapy responses. Fance heterozygous mutant resulted in increased tumorigenesis and poor prognosis in mice.</p
Image1_Pan-cancer analysis of the prognostic and immunological role of Fanconi anemia complementation group E.JPEG
Fanconi anemia (FA) genes contribute to tumorigenesis by regulating DNA repair. Despite its importance for assembly and functionality of the FA core complex, no pan-cancer analysis of FANCE was performed. We aimed to provide a comprehensive understanding of the role of FANCE in cancers. Based on The Cancer Genome Atlas (TCGA), Cancer Cell Line Encyclopedia (CCLE), Genotype Tissue-Expression (GTEx), Human Protein Atlas (HPA), Gene Expression Omnibus (GEO), and Cancer Single-cell Atlas (CancerSEA) databases, we investigated the carcinogenicity of FANCE using various bioinformatics methods, including FANCE expression and prognosis, immune invasion, tumor mutation burden, microsatellite instability, and neoantigens. We monitored Fance mutations in mice that caused tumorigenesis. FANCE expression and activity scores were upregulated in 15 and 21 cancers. High expression of FANCE affected shorter overall survival (OS) in seven cancers and longer overall survival in three cancers. It was correlated with shorter overall survival and progression-free interval (PFI) in endometrial cancer and longer overall survival and PFI in cervical cancer. FANCE expression negatively correlated with stromal/immune scores in 21 cancers including cervical cancer, endometrial cancer, and ovarian cancer. FANCE expression negatively correlated with CD8 T cells in endometrial cancer and positively correlated with M1 macrophages in cervical cancer, possibly related to cancer prognosis. FANCE positively correlated with immune checkpoint inhibitors PD-1, PD-L1, and CTLA4 in endometrial cancer and ovarian cancer. FANCE expression positively correlated with microsatellite instability, tumor mutational burden, and neoantigens in 7, 22, and five cancers, especially in endometrial cancer, potentially increasing the effectiveness of immunotherapy. Single-cell sequencing data showed FANCE was primarily expressed in cancer cells in cervical and ovarian cancer, and in fibroblasts in endometrial cancer. Fance heterozygous mutant mice had increased tumor incidences and shorter overall survival and tumor-free survival (TFS) than Fance homozygous mutant mice and wild-type mice. Conclusively, FANCE potential to serve as a biomarker for cancer prognosis and may predict cancer immunotherapy responses. Fance heterozygous mutant resulted in increased tumorigenesis and poor prognosis in mice.</p
Versatile Miniature Tunable Liquid Lenses Using Transparent Graphene Electrodes
This paper presents, for the first
time, versatile and low-cost
miniature liquid lenses with graphene as electrodes. Tunable focal
length is achieved by changing the droplet curvature using electrowetting
on dielectric (EWOD). Ionic liquid and KCl solution are utilized as
lens liquid on the top of a flexible Teflon-coated PDMS/parylene membrane.
Transparent and flexible, graphene allows transmission of visible
light as well as large deformation of the polymer membrane to achieve
requirements for different lens designs and to increase the field
of view without damaging of electrodes. The tunable range for the
focal length is between 3 and 7 mm for a droplet with a volume of
3 μL. The visualization of bone marrow dendritic cells is demonstrated
by the liquid lens system with a high resolution (456 lp/mm)
Vertically Stacked and Self-Encapsulated van der Waals Heterojunction Diodes Using Two-Dimensional Layered Semiconductors
van
der Waals heterojunctions using 2D semiconducting materials
could overcome the defect issues included by lattice mismatch in conventional
epitaxially grown heterojunctions with bulk materials and could enable
a much wider palette for choice of materials and more sophisticated
device design. Such 2D heterojunction devices are of great interest
for important functional devices such as diodes, bipolar junction
transistors, light-emitting diodes, and photodetectors. In this paper,
we demonstrate a truly vertical p–n heterojunction diode built
from 2D semiconductors (MoS<sub>2</sub> and BP) and compare its performance
against conventional lateral 2D heterojunction devices (partially
overlapped 2D heterostructures). Both vertical and lateral p–n
heterostructure diodes exhibit a strong rectification ratio even with
no gate voltage applied. More importantly, the results show that the
vertical diode delivers 70 times higher current density under forward
bias than a conventional lateral device design and the improved device
performance can be attributed to the complete elimination of series
resistance. Low-temperature measurements and TCAD simulations are
used to determine the barrier height at the junctions. Moreover, the
vertical device structure allows certain ambiently unstable 2D semiconductors
to be fully encapsulated by the materials on top, preventing the material
from degradation. This work demonstrates the potential of using the
vertically stacked 2D semiconductors for future nanoelectronic and
optoelectronic devices with optimal performance
Low-Resistance 2D/2D Ohmic Contacts: A Universal Approach to High-Performance WSe<sub>2</sub>, MoS<sub>2</sub>, and MoSe<sub>2</sub> Transistors
We
report a new strategy for fabricating 2D/2D low-resistance ohmic contacts
for a variety of transition metal dichalcogenides (TMDs) using van
der Waals assembly of substitutionally doped TMDs as drain/source
contacts and TMDs with no intentional doping as channel materials.
We demonstrate that few-layer WSe<sub>2</sub> field-effect transistors
(FETs) with 2D/2D contacts exhibit low contact resistances of ∼0.3
kΩ μm, high on/off ratios up to >10<sup>9</sup>, and
high drive currents exceeding 320 μA μm<sup>–1</sup>. These favorable characteristics are combined with a two-terminal
field-effect hole mobility μ<sub>FE</sub> ≈ 2 ×
10<sup>2</sup> cm<sup>2</sup> V<sup>–1</sup> s<sup>–1</sup> at room temperature, which increases to >2 × 10<sup>3</sup> cm<sup>2</sup> V<sup>–1</sup> s<sup>–1</sup> at cryogenic
temperatures. We observe a similar performance also in MoS<sub>2</sub> and MoSe<sub>2</sub> FETs with 2D/2D drain and source contacts.
The 2D/2D low-resistance ohmic contacts presented here represent a
new device paradigm that overcomes a significant bottleneck in the
performance of TMDs and a wide variety of other 2D materials as the
channel materials in postsilicon electronics
High-Performance WSe<sub>2</sub> Phototransistors with 2D/2D Ohmic Contacts
We
report high-performance WSe<sub>2</sub> phototransistors with
two-dimensional (2D) contacts formed between degenerately p-doped
WSe<sub>2</sub> and undoped WSe<sub>2</sub> channel. A photoresponsivity
of ∼600 mA/W with a high external quantum efficiency up to
100% and a fast response time (both rise and decay times) shorter
than 8 μs have been achieved concurrently. More importantly,
our WSe<sub>2</sub> phototransistor exhibits a high specific detectivity
(∼10<sup>13</sup> Jones) in vacuum, comparable or higher than
commercial Si- and InGaAs-based photodetectors. Further studies have
shown that the high photoresponsivity and short response time of our
WSe<sub>2</sub> phototransistor are mainly attributed to the lack
of Schottky-barriers between degenerately p-doped WSe<sub>2</sub> source/drain
contacts and undoped WSe<sub>2</sub> channel, which can reduce the
RC time constant and carrier transit time of a photodetector. Our
experimental results provide an accessible strategy to achieve high-performance
WSe<sub>2</sub> phototransistor architectures by improving their electrical
transport and photocurrent generation simultaneously, opening up new
avenues for engineering future 2D optoelectronic devices