Discovery AP2/ERF family genes in silico in Medicago truncatula

Medicago truncatula is a legume model plant due to its small genome and it has been used to study the molecular events of legume biology. As a crucial plant-specific gene family, AP2/EREBP transcription factors (TFs) are important for plant development and biotic and abiotic stress responses. The purpose of the work was to determine AP2/ERF family genes in silico of M. truncatula, and also sheds light on molecular mechanism of stress responses of AP2/EREBPs. We investigated AP2/ERF family genes of M. truncatula using BLAST search. Thirty-seven (37) AP2/ERF family genes were identified and sorted into the corresponding subfamily or subgroup, with sequences alignment and phylogenetic analysis of the AP2-like TFs proteins between in Arabidopsis and in M. truncatula, and expression patterns of putative 35 AP2/ERF family genes in M. truncatula were revealed. Identification of AP2/ERF family genes would make them easier to clone and position those functional genes, and which also would open new opportunities for the study of molecular regulatory network of stress resistance in M. truncatula.Keywords: Medicago truncatula, transcription factor, AP2/ERFAfrican Journal of Biotechnology Vol. 12(23), pp. 3636-364

Corrupting Convolution-based Unlearnable Datasets with Pixel-based Image Transformations

Unlearnable datasets lead to a drastic drop in the generalization performance of models trained on them by introducing elaborate and imperceptible perturbations into clean training sets. Many existing defenses, e.g., JPEG compression and adversarial training, effectively counter UDs based on norm-constrained additive noise. However, a fire-new type of convolution-based UDs have been proposed and render existing defenses all ineffective, presenting a greater challenge to defenders. To address this, we express the convolution-based unlearnable sample as the result of multiplying a matrix by a clean sample in a simplified scenario, and formalize the intra-class matrix inconsistency as $\Theta_{imi}$, inter-class matrix consistency as $\Theta_{imc}$ to investigate the working mechanism of the convolution-based UDs. We conjecture that increasing both of these metrics will mitigate the unlearnability effect. Through validation experiments that commendably support our hypothesis, we further design a random matrix to boost both $\Theta_{imi}$ and $\Theta_{imc}$, achieving a notable degree of defense effect. Hence, by building upon and extending these facts, we first propose a brand-new image COrruption that employs randomly multiplicative transformation via INterpolation operation to successfully defend against convolution-based UDs. Our approach leverages global pixel random interpolations, effectively suppressing the impact of multiplicative noise in convolution-based UDs. Additionally, we have also designed two new forms of convolution-based UDs, and find that our defense is the most effective against them

The potential therapeutic role of extracellular vesicles in critical-size bone defects: Spring of cell-free regenerative medicine is coming

In recent years, the incidence of critical-size bone defects has significantly increased. Critical-size bone defects seriously affect patients’ motor functions and quality of life and increase the need for additional clinical treatments. Bone tissue engineering (BTE) has made great progress in repairing critical-size bone defects. As one of the main components of bone tissue engineering, stem cell-based therapy is considered a potential effective strategy to regenerate bone tissues. However, there are some disadvantages including phenotypic changes, immune rejection, potential tumorigenicity, low homing efficiency and cell survival rate that restrict its wider clinical applications. Evidence has shown that the positive biological effects of stem cells on tissue repair are largely mediated through paracrine action by nanostructured extracellular vesicles (EVs), which may overcome the limitations of traditional stem cell-based treatments. In addition to stem cell-derived extracellular vesicles, the potential therapeutic roles of nonstem cell-derived extracellular vesicles in critical-size bone defect repair have also attracted attention from scholars in recent years. Currently, the development of extracellular vesicles-mediated cell-free regenerative medicine is still in the preliminary stage, and the specific mechanisms remain elusive. Herein, the authors first review the research progress and possible mechanisms of extracellular vesicles combined with bone tissue engineering scaffolds to promote bone regeneration via bioactive molecules. Engineering modified extracellular vesicles is an emerging component of bone tissue engineering and its main progression and clinical applications will be discussed. Finally, future perspectives and challenges of developing extracellular vesicle-based regenerative medicine will be given. This review may provide a theoretical basis for the future development of extracellular vesicle-based biomedicine and provide clinical references for promoting the repair of critical-size bone defects

The Beale-Kato-Majda criterion to the 3D Magneto-hydrodynamics equations

We study the blow-up criterion of smooth solutions to the 3D MHD equations. By means of the Littlewood-Paley decomposition, we prove a Beale-Kato-Majda type blow-up criterion of smooth solutions via the vorticity of velocity only, i. e. \sup_{j\in\Z}\int_0^T\|\Delta_j(\na\times u)\|_\infty dt, where $\Delta_j$ is a frequency localization on $|\xi|\approx 2^j$.Comment: 12page

Associations between air pollutant and pneumonia and asthma requiring hospitalization among children aged under 5 years in Ningbo, 2015–2017

IntroductionExposure to ambient air pollutants is associated with an increased incidence of respiratory diseases such as pneumonia and asthma, especially in younger children. We investigated the relationship between rates of hospitalization of children aged under 5 years for pneumonia and asthma and the concentration of air pollutants in Ningbo between January 1, 2015 and August 29, 2017.MethodsData were obtained from the Ningbo Air Quality Data Real-time Publishing System and the big data platform of the Ningbo Health Information Center. A generalized additive model was established via logarithmic link function and utilized to evaluate the effect of pollutant concentration on lag dimension and perform sensitivity analysis.ResultsA total of 10,301 cases of pneumonia and 115 cases of asthma were identified over the course of this study. Results revealed that PM2.5, PM10, SO2 and NO2 were significantly associated with hospitalization for pneumonia and asthma in children under 5 years of age. For every 10-unit increase in lag03 air pollutant concentration, hospitalization for pneumonia and asthma due to PM2.5, PM10, SO2 and NO2 increased by 2.22% (95%CI: 0.64%, 3.82%), 1.94% (95%CI: 0.85%, 3.04%), 11.21% (95%CI: 4.70%, 18.10%) and 5.42% (95%CI: 3.07%, 7.82%), respectively.DiscussionAdverse effects of air pollutants were found to be more severe in children aged 1 to 5 years and adverse effects due to PM2.5, PM10 and SO2 were found to be more severe in girls. Our findings underscore the need for implementation of effective public health measures to urgently improve air quality and reduce pediatric hospitalizations due to respiratory illness

Exploration of altered miRNA expression and function in MSC-derived extracellular vesicles in response to hydatid antigen stimulation

BackgroundHydatid disease is caused by Echinococcus parasites and can affect various tissues and organs in the body. The disease is characterized by the presence of hydatid cysts, which contain specific antigens that interact with the host’s immune system. Mesenchymal stem cells (MSCs) are pluripotent stem cells that can regulate immunity through the secretion of extracellular vesicles (EVs) containing microRNAs (miRNAs).MethodsIn this study, hydatid antigens were isolated from sheep livers and mice peritoneal cavities. MSCs derived from mouse bone marrow were treated with different hydatid antigens, and EVs were isolated and characterized from the conditioned medium of MSCs. Small RNA library construction, miRNA target prediction, and differential expression analysis were conducted to identify differentially expressed miRNAs. Functional enrichment and network construction were performed to explore the biological functions of the target genes. Real-time PCR and Western blotting were used for miRNA and gene expression verification, while ELISA assays quantified TNF, IL-1, IL-6, IL-4, and IL-10 levels in cell supernatants.ResultsThe study successfully isolated hydatid antigens and characterized MSC-derived EVs, demonstrating the impact of antigen concentration on MSC viability. Key differentially expressed miRNAs, such as miR-146a and miR-9-5p, were identified, with functional analyses revealing significant pathways like Endocytosis and MAPK signaling associated with these miRNAs’ target genes. The miRNA-HUB gene regulatory network identified crucial miRNAs and HUB genes, such as Traf1 and Tnf, indicating roles in immune modulation and osteogenic differentiation. Protein–protein interaction (PPI) network analysis highlighted central HUB genes like Akt1 and Bcl2. ALP activity assays confirmed the influence of antigens on osteogenic differentiation, with reduced ALP activity observed. Expression analysis validated altered miRNA and chemokine expression post-antigen stimulation, with ELISA analysis showing a significant reduction in CXCL1 expression in response to antigen exposure.ConclusionThis study provides insights into the role of MSC-derived EVs in regulating parasite immunity. The findings suggest that hydatid antigens can modulate the expression of miRNAs in MSC-derived EVs, leading to changes in chemokine expression and osteogenic capacity. These findings contribute to a better understanding of the immunomodulatory mechanisms involved in hydatid disease and provide potential therapeutic targets for the development of new treatment strategies

Contrasting patterns of community-weighted mean traits and functional diversity in driving grassland productivity changes under N and P addition

Fertilization could influence ecosystem structure and functioning through species turnover (ST) and intraspecific trait variation (ITV), especially in nutrient limited ecosystems. To quantify the relative importance of ITV and ST in driving community functional structure and productivity changes under nitrogen (N) and phosphorous (P) addition in semiarid grasslands. In this regard, we conducted a four-year fertilizer addition experiment in a semiarid grassland on the Loess Plateau, China. We examined how fertilization affects species-level leaf and root trait plasticity to evaluate the ability of plants to manifest different levels of traits in response to different N and P addition. Also, we assessed how ITV or ST dominated community-weighted mean (CWM) traits and functional diversity variations and evaluated their effects on grassland productivity. The results showed that the patterns of plasticity varied greatly among different plant species, and leaf and root traits showed coordinated variations following fertilization. Increasing the level of N and P increased CWM_specific leaf area (CWM_SLA), CWM_leaf N concentration (CWM_LN) and CWM_maximum plant height (CWM_Hmax) and ITV predominate these CWM traits variations. As a results, increased CWM_Hmax, CWM_LN and CWM_SLA positively influenced grassland productivity. In contrast, functional divergence decreased with increasing N and P and showed negative relationships with grassland productivity. Our results emphasized that CWM traits and functional diversity contrastingly drive changes in grassland productivity under N and P addition

Studies on Chemical Characterization of Ginkgo Amillaria Oral Solution and Its Drug–Drug Interaction With Piceatannol 3′-O-β-D-Glucopyranoside for Injection

Ginkgo Amillaria oral solution (GAO) is commonly used for the treatment of cardiovascular and cerebrovascular diseases in China. Piceatannol-3′-O-β-D-glucopyranoside for injection (PGI) is mainly used for the prevention and treatment of ischemic cerebrovascular diseases. With the spread of cerebrovascular disease, the possibility of combining the two drugs has increased; however, there is no research on the drug–drug interaction (DDI) between these two medicines. In this paper, an ultrahigh-performance liquid chromatography/quadrupole–orbitrap mass spectrometry (UHPLC/Q-Orbitrap MS) method was established to characterize the chemical constituents of GAO first; 62 compounds were identified or tentatively identified based on their retention time (RT), MS, and MS/MS data. Nine main compounds were determined by ultrahigh-performance liquid chromatography/triple quadrupole mass spectrometry (UPLC-QQQ-MS). Furthermore, incubation with liver microsomes in vitro was fulfilled; the results showed that GAO had a significant inhibitory effect on UGT1A9 and UGT2B7 (p < 0.05), and PGI was mainly metabolized by UGT1A9. The identification results of in vivo metabolites of PGI showed that PGI mainly undergoes a phase II binding reaction mediated by UDP-glucuronosyltransferase (UGT) and sulfotransferase (SULT) in vivo. Therefore, pharmacokinetic studies were performed to investigate the DDI between GAO and PGI. The results showed that the AUC (p < 0.05) and T1/2 (p < 0.05) of PGI in vivo were significantly increased when administered together with GAO, whereas the CL was significantly decreased (p < 0.05). The exploration of in vitro and in vivo experiments showed that there was a DDI between GAO and PGI

Buyang Huanwu Decoction Attenuates Infiltration of Natural Killer Cells and Protects Against Ischemic Brain Injury

Background/Aims: Natural killer (NK) cells are among the first immune cells that respond to an ischemic insult in human brains. The infiltrated NK cells damage blood-brain barrier (BBB) and exacerbate brain infarction. Buyang Huanwu Decoction (BHD), a classic Chinese traditional herbal prescription, has long been used for the treatment of ischemic stroke. The present study investigated whether BHD can prevent brain infiltration of NK cells, attenuate BBB disruption and improve ischemic outcomes. Methods: Transient focal cerebral ischemia was induced in rats by a 60-minute middle cerebral artery occlusion, and BHD was orally administrated at the onset of reperfusion, 12 hours later, then twice daily. Assessed parameters on Day 3 after ischemia were: neurological and motor functional deficits through neurological deficit score and rotarod test, respectively; brain infarction through TTC staining; BBB integrity through Evans blue extravasation; matrix metalloproteinase-2/9 activities through gelatin zymography; tight junction protein, nuclear factor-kB (NF-kB) p65 and phospho-p65 levels through Western blotting; NK cell brain infiltration and CXCR3 levels on NK cells through flow cytometry; interferon-γ production through ELISA; CXCL10 mRNA levels through real-time PCR; CXCL10 expression and p65 nuclear translocation through immunofluorescence staining. Results: BHD markedly reduced brain infarction, improved rotarod performance, and attenuated BBB breakdown. Concurrently, BHD attenuated the upregulation of matrix metalloproteinase-2/9 activities and the degradation of tight junction proteins in the ischemic brain. Infiltration of NK cells was observed in the ischemic hemisphere, and this infiltration was blunted by treatment with BHD. BHD suppressed brain ischemia-induced interferon-γ and chemokine CXCL10 production. Furthermore, BHD significantly reduced the expression of CXCR3 on brain-infiltrated NK cells. Strikingly, BHD did not affect NK cell levels or its CXCR3 expression in the spleen or peripheral blood after brain ischemia. The nuclear translocation of NF-kB p65 and phospho-p65 in the ischemic brain was inhibited by BHD. Conclusion: Our findings suggest that BHD prevents brain infiltration of NK cells, preserves BBB integrity and eventually improves ischemic outcomes. The inhibitory effects of BHD on NK cell brain invasion may involve its ability of suppressing NF-kB-associated CXCL10-CXCR3-mediated chemotaxis. Notably, BHD only suppresses NK cells and their CXCR3 expression in the ischemic brain, but not those in periphery

On the regularity criterion of weak solution for the 3D viscous Magneto-hydrodynamics equations

We improve and extend some known regularity criterion of weak solution for the 3D viscous Magneto-hydrodynamics equations by means of the Fourier localization technique and Bony's para-product decomposition.Comment: 13page