Mapping and candidate-gene screening of the novel Turnip mosaic virus resistance gene retr02 in Chinese cabbage (Brassica rapa L.)

The extreme resistance to Turnip mosaic virus observed in the Chinese cabbage (Brassica rapa) line, BP8407, is monogenic and recessive. Bulked segregant analysis was carried out to identify simple sequence repeat and Indel markers linked to this recessive resistance gene, termed recessive Turnip mosaic virus resistance 02 (retr02). Mapping of PCR-specific Indel markers on 239 individuals of a BP8407 × Ji Zao Chun F 2 population, located this resistance gene to a 0.9-cM interval between two Indel markers (BrID10694 and BrID101309) and in scaffold000060 or scaffold000104 on chromosome A04 of the B. rapa genome. Eleven eukaryotic initiation factor 4E (eIF4E) and 14 eukaryotic initiation factor 4G (eIF4G) genes are predicted in the B. rapa genome. A candidate gene, Bra035393 on scaffold000104, was predicted within the mapped resistance locus. The gene encodes the eIF(iso)4E protein. Bra035393 was sequenced in BP8407 and Ji Zao Chun. A polymorphism (A/G) was found in exon 3 between BP8407 and Ji Zao Chun. This gene was analysed in four resistant and three susceptible lines. A correlation was observed between the amino acid substitution (Gly/Asp) in the eIF(iso)4E protein and resistance/susceptibility. eIF(iso)4E has been shown previously to interact with the TuMV genome-linked protein, VPg

Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface.

Members of the epidermal growth factor receptor family (EGFR/ERBB1, ERBB2/HER2, ERBB3/HER3 and ERBB4/HER4) are key targets for inhibition in cancer therapy. Critical for activation is the formation of an asymmetric dimer by the intracellular kinase domains, in which the carboxy-terminal lobe (C lobe) of one kinase domain induces an active conformation in the other. The cytoplasmic protein MIG6 (mitogen-induced gene 6; also known as ERRFI1) interacts with and inhibits the kinase domains of EGFR and ERBB2 (refs 3-5). Crystal structures of complexes between the EGFR kinase domain and a fragment of MIG6 show that a approximately 25-residue epitope (segment 1) from MIG6 binds to the distal surface of the C lobe of the kinase domain. Biochemical and cell-based analyses confirm that this interaction contributes to EGFR inhibition by blocking the formation of the activating dimer interface. A longer MIG6 peptide that is extended C terminal to segment 1 has increased potency as an inhibitor of the activated EGFR kinase domain, while retaining a critical dependence on segment 1. We show that signalling by EGFR molecules that contain constitutively active kinase domains still requires formation of the asymmetric dimer, underscoring the importance of dimer interface blockage in MIG6-mediated inhibition

A high resolution mid-infrared survey of water emission from protoplanetary disks

We present the largest survey of spectrally resolved mid-infrared water emission to date, with spectra for 11 disks obtained with the Michelle and TEXES spectrographs on Gemini North. Water emission is detected in 6 of 8 disks around classical T Tauri stars. Water emission is not detected in the transitional disks SR 24 N and SR 24 S, in spite of SR 24 S having pre-transitional disk properties like DoAr 44, which does show water emission (Salyk et al. 2015). With R~100,000, the TEXES water spectra have the highest spectral resolution possible at this time, and allow for detailed lineshape analysis. We find that the mid-IR water emission lines are similar to the "narrow component" in CO rovibrational emission (Banzatti & Pontoppidan 2015), consistent with disk radii of a few AU. The emission lines are either single peaked, or consistent with a double peak. Single-peaked emission lines cannot be produced with a Keplerian disk model, and may suggest that water participates in the disk winds proposed to explain single-peaked CO emission lines (Bast et al. 2011, Pontoppidan et al. 2011). Double-peaked emission lines can be used to determine the radius at which the line emission luminosity drops off. For HL Tau, the lower limit on this measured dropoff radius is consistent with the 13 AU dark ring (ALMA partnership et al. 2015). We also report variable line/continuum ratios from the disks around DR Tau and RW Aur, which we attribute to continuum changes and line flux changes, respectively. The reduction in RW Aur line flux corresponds with an observed dimming at visible wavelengths (Rodriguez et al. 2013).Comment: To appear in the Astrophysical Journa

Atomic-scale identification of novel planar defect phases in heteroepitaxial YBa2_2Cu3_3O7−δ_{7-\delta} thin films

We have discovered two novel types of planar defects that appear in heteroepitaxial YBa$_2$Cu$_3$O$_{7-\delta}$ (YBCO123) thin films, grown by pulsed-laser deposition (PLD) either with or without a La$_{2/3}$Ca$_{1/3}$MnO$_3$ (LCMO) overlayer, using the combination of high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) imaging and electron energy loss spectroscopy (EELS) mapping for unambiguous identification. These planar lattice defects are based on the intergrowth of either a BaO plane between two CuO chains or multiple Y-O layers between two CuO$_2$ planes, resulting in non-stoichiometric layer sequences that could directly impact the high-$T_c$ superconductivity

Transciptome Analysis Illuminates the Nature of the Intracellular Interaction in a Vertebrate-Algal Symbiosis

During embryonic development, cells of the green alga Oophila amblystomatis enter cells of the salamander Ambystoma maculatum forming an endosymbiosis. Here, using de novo dual-RNA seq, we compared the host salamander cells that harbored intracellular algae to those without algae and the algae inside the animal cells to those in the egg capsule. This two-by-two-way analysis revealed that intracellular algae exhibit hallmarks of cellular stress and undergo a striking metabolic shift from oxidative metabolism to fermentation. Culturing experiments with the alga showed that host glutamine may be utilized by the algal endosymbiont as a primary nitrogen source. Transcriptional changes in salamander cells suggest an innate immune response to the alga, with potential attenuation of NF-κB, and metabolic alterations indicative of modulation of insulin sensitivity. In stark contrast to its algal endosymbiont, the salamander cells did not exhibit major stress responses, suggesting that the host cell experience is neutral or beneficial

Ginzburg-Landau theory for the conical cycloid state in multiferroics: applications to CoCr2_2O4_4

We show that the cycloidal magnetic order of a multiferroic can arise in the absence of spin and lattice anisotropies, for e.g., in a cubic material, and this explains the occurrence of such a state in CoCr$_2$O$_4$. We discuss the case when this order coexists with ferromagnetism in a so called `conical cycloid' state, and show that a direct transition to this state from the ferromagnet is necessarily first order. On quite general grounds, the reversal of the direction of the uniform magnetization in this state can lead to the reversal of the electric polarization as well, without the need to invoke `toroidal moment' as the order parameter.Comment: 6 pages, 3 figures, accepted for publication in Phys. Rev.

Spin Structure Factor of the Frustrated Quantum Magnet Cs_2CuCl_4

The ground state properties and neutron structure factor for the two-dimensional antiferromagnet on the triangular lattice, with uni-directional anisotropy in the nearest-neighbor exchange couplings and a weak Dzyaloshinskii-Moriya (DM) interaction, are studied. This Hamiltonian has been used to interpret neutron scattering measurements on the spin 1/2 spiral spin-density-wave system, Cs_2CuCl_4, [R. Coldea, et al., Phys. Rev. B 68, 134424 (2003)]. Calculations are performed using a 1/S expansion, taking into account interactions between spin-waves. The ground state energy, the shift of the ordering wave-vector, Q, and the local magnetization are all calculated to order 1/S^2. The neutron structure factor, obtained using anharmonic spin-wave Green's functions to order 1/S, is shown to be in reasonable agreement with published neutron data, provided that slightly different parameters are used for the exchange and DM interactions than those inferred from measurements in high magnetic field.Comment: 14 pages, 6 eps figures, submitted to Phys. Rev.