Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.)

Single feature polymorphisms (SFPs) are microarray-based molecular markers that are detected by hybridization of DNA or cRNA to oligonucleotide probes. With an objective to identify the potential polymorphic markers for drought tolerance in pigeonpea [Cajanus cajan (L.) Millspaugh], an important legume crop for the semi-arid tropics but deficient in genomic resources, Affymetrix Genome Arrays of soybean (Glycine max), a closely related species of pigeonpea were used on cRNA of six parental genotypes of three mapping populations of pigeonpea segregating for agronomic traits like drought tolerance and pod borer (Helicoverpa armigiera) resistance. By using robustified projection pursuit method on 15 pair-wise comparisons for the six parental genotypes, 5,692 SFPs were identified. Number of SFPs varied from 780 (ICPL 8755 × ICPL 227) to 854 (ICPL 151 × ICPL 87) per parental combination of the mapping populations. Randomly selected 179 SFPs were used for validation by Sanger sequencing and good quality sequence data were obtained for 99 genes of which 75 genes showed sequence polymorphisms. While associating the sequence polymorphisms with SFPs detected, true positives were observed for 52.6% SFPs detected. In terms of parental combinations of the mapping populations, occurrence of true positives was 34.48% for ICPL 151 × ICPL 87, 41.86% for ICPL 8755 × ICPL 227, and 81.58% for ICP 28 × ICPW 94. In addition, a set of 139 candidate genes that may be associated with drought tolerance has been identified based on gene ontology analysis of the homologous pigeonpea genes to the soybean genes that detected SFPs between the parents of the mapping populations segregating for drought tolerance

A Novel Function of Apolipoprotein E: Upregulation of ATP-Binding Cassette Transporter A1 Expression

Despite the well known importance of apolipoprotein (Apo) E in cholesterol efflux, the effect of ApoE on the expression of ATP-binding cassette transporter A1 (ABCA1) has never been investigated. The objective of this study was to determine the effect of ApoE on ApoB-carrying lipoprotein-induced expression of ABCA1, a protein that mediates cholesterol efflux. Our data demonstrate that ApoB-carrying lipoproteins obtained from both wild-type and ApoE knockout mice induced ApoAI-mediated cholesterol efflux in mouse macrophages, which was associated with an enhanced ABCA1 promoter activity, and an increased ABCA1 mRNA and protein expression. In addition, these lipoproteins increased the level of phosphorylated specificity protein 1 (Sp1) and the amount of Sp1 bound to the ABCA1 promoter. However, all these inductions were significantly diminished in cells treated with ApoE-free lipoproteins, when compared to those treated with wild-type lipoproteins. Enrichment with human ApoE3 reversed the reduced inducibility of ApoE-free lipoproteins. Moreover, we observed that inhibition of Sp1 DNA-binding by mithramycin A diminished ABCA1 expression and ApoAI-mediated cholesterol efflux induced by ApoB-carrying lipoproteins, and that mutation of the Sp1-binding motif in the ABCA1 promoter region diminished ApoB-carrying lipoprotein-induced ABCA1 promoter activity. Collectively, these data suggest that ApoE associated with ApoB-carrying lipoproteins has an upregulatory role on ABCA1 expression, and that induction of Sp1 phosphorylation is a mechanism by which ApoE upregulates ABCA1 expression

Reduced expression of N-Myc downstream-regulated gene 2 in human thyroid cancer

<p>Abstract</p> <p>Background</p> <p><it>NDRG</it>2 (N-Myc downstream-regulated gene 2) was initially cloned in our laboratory. Previous results have shown that <it>NDRG</it>2 expressed differentially in normal and cancer tissues. Specifically, <it>NDRG</it>2 mRNA was down-regulated or undetectable in several human cancers, and over-expression of <it>NDRG</it>2 inhibited the proliferation of cancer cells. <it>NDRG</it>2 also exerts important functions in cell differentiation and tumor suppression. However, it remains unclear whether <it>NDRG</it>2 participates in carcinogenesis of the thyroid.</p> <p>Methods</p> <p>In this study, we investigated the expression profile of human <it>NDRG</it>2 in thyroid adenomas and carcinomas, by examining tissues from individuals with thyroid adenomas (n = 40) and carcinomas (n = 35), along with corresponding normal tissues. Immunohistochemistry, quantitative RT-PCR and western blot methods were utilized to determine both the protein and mRNA expression status of Ndrg2 and c-Myc.</p> <p>Results</p> <p>The immunostaining analysis revealed a decrease of Ndrg2 expression in thyroid carcinomas. When comparing adenomas or carcinomas with adjacent normal tissue from the same individual, the mRNA expression level of <it>NDRG</it>2 was significantly decreased in thyroid carcinoma tissues, while there was little difference in adenoma tissues. This differential expression was confirmed at the protein level by western blotting. However, there were no significant correlations of <it>NDRG</it>2 expression with gender, age, different histotypes of thyroid cancers or distant metastases.</p> <p>Conclusion</p> <p>Our data indicates that <it>NDRG</it>2 may participate in thyroid carcinogenesis. This finding provides novel insight into the important role of <it>NDRG2 </it>in the development of thyroid carcinomas. Future studies are needed to address whether the down-regulation of <it>NDRG</it>2 is a cause or a consequence of the progression from a normal thyroid to a carcinoma.</p

Desert shrub stemflow and its significance in soil moisture replenishment

Stemflow of xerophytic shrubs represents a significant component of water replenishment to the soil-root system influencing water utilization of plant roots at the stand scale, especially in water scarce desert ecosystems. In this study, stemflow of Caragana korshinskii was quantified by an aluminum foil collar collection method on re-vegetated sand dunes of the Shapotou restored desert ecosystem in northwestern China. Time domain reflectometry probes were inserted horizontally at 20 different soil profile depths under the C. korshinskii shrub to monitor soil moisture variation at hourly intervals. Results indicated that 2.2 mm precipitation was necessary for the generation of stemflow for C. korshinskii. Stemflow averaged 8% of the gross precipitation and the average funnelling ratio was as high as 90. The soil moisture in the uppermost soil profile was strongly correlated with individual rainfall and the stemflow strengthened this relationship. Therefore, it is favourable for the infiltrated water redistribution in the deeper soil profile of the root zone. Consequently, stemflow contributes significantly to a positive soil moisture balance in the root zone and the replenishment of soil moisture at deeper soil layers. This plays an important role in plant survival and the general ecology of arid desert environments

Menthol in Electronic Cigarettes: A Contributor to Respiratory Disease?

Menthol is widely used in tobacco products. This study compared the effects of menthol on human bronchial epithelium using submerged cultures, a VITROCELL® cloud chamber that provides air liquid interface (ALI) exposure without solvents or heating, and a Cultex ALI system that delivers aerosol equivalent to that inhaled during vaping. In submerged culture, menthol significantly increased calcium influx and mitochondrial reactive oxygen species (ROS) via the TRPM8 receptor, responses that were inhibited by a TRPM8 antagonist. VITROCELL® cloud chamber exposure of BEAS-2B monolayers increased mitochondrial protein oxidation, expression of the antioxidant enzyme SOD2, activation of NF-κB, and secretion of inflammatory cytokines (IL-6 and IL-8). Proteomics data collected following ALI exposure of 3D EpiAirway tissue in the Cultex showed upregulation of NRF-2-mediated oxidative stress, oxidative phosphorylation, and IL-8 signaling. Across the three platforms, menthol adversely effected human bronchial epithelium in a manner that could lead to respiratory disease

Post Life: Beijing Media Arts Biennale

Beijing Media Arts Biennale (BMAB) was hosted by Central Academy of Fine Arts with major funding by China National Art Fund. The Biennale aims to be an international platform for a broad range of practitioners from the fields of art and technology. The theme of BMAB 2018 was "Post Life", a topic intended to evoke questions about Life in this technology driven social context. The exhibition invited media artists from China and abroad who are active in Telds such as moving images, interactive installations, immersive art, biological art, mechanical installations, audio-visual arts, Internet art, sound art and mixed media.The Biennale consists of three parts: Post Life thematic exhibition, Lab Space, and tour exhibitions. Thee thematic exhibition presents international art works that relevant to topics of “Data Life”, “Mechanical Life” and “Synthesize Life”. Lab Space is a special exhibition that focuses on showcasing international laboratory practice in art and technology.Furthermore the event expands into forums, live performance, workshops, panel discussions, various digital and physical public engagements, an online hyperlink exhibition and a publication.The Biennale showcased international leading artists who are contributing, experimenting and articulating challenging questions relating to the philosophy, ethics, morals and aesthetics of art and its relationship to frontiers of science; such as Guy Ben-Ary & Boryana Rossa, Helen Pynor & Peta Clancy, Brad Miller, Nancy Mauro-Flude, Oron Catts & Ionat Zurr, Michaela Davis & Boris Bagattini, Mari Velonaki, Wade Marynowsky, Kynan Tan, Thomas William Smith, Emil Schult & Emma Nilsson, Xu Yibo, Ma Yao & Liu Sha, David Bowen, Tobias Gremmler, Etsu Egami, Zhang Tianwei, Qui Yu, Su Yongijian, Elena Knox, Adam Haar, Yang02 & So Kanno, Liu Xin, Amy Karle, Dmitry Morozov, Hapreet Singh Sareen, Liang Wenhua