Gone and Back—The Anthropogenic History of Coccotylus brodiei (Turner) Kützing and Furcellaria lumbricalis (Hudson) J.V. Lamouroux in the Gulf of Gdańsk (Southern Baltic Sea)

The Gulf of Gdańsk environment has supported the development and growth of the local community for centuries but has been significantly degraded as a result of the progressive eutrophication process that started in 1960, the extensive exploitation of marketable species (plants and fish) and pollution limiting the growth of marine organisms. Multistressors of the Anthropocene era have left their mark on all aspects of the ecosystem, but despite this, the gulf region has been considered to have exceptional environmental value and high biodiversity in comparison with adjacent regions. In 2004, a Natura 2000 site was created in the eastern part known as Puck Bay, and actions were taken to protect endangered habitats and species. Between 2019 and 2020, intensive field studies were conducted in Puck Bay on flora to assess biodiversity and habitat resources. The material was collected for qualitative and quantitative analysis. This allowed observation of species that have not been reported since the 1970s, i.e., Coccotylus brodiei (Turner) Kützing and Furcellaria lumbricalis (Hudson) J.V. Lamouroux. Both species co-occurred as in the period before the 1960s in the form of free-floating thalli. The rediscovery of these taxa suggests that despite very unfavourable conditions for their development due to anthropogenic pressures, they were able to survive, and their occurrence throughout Puck Bay indicates improvement in environmental quality due to declining human impact. Our results indicate that benthic algal communities have high regeneration potential, but in the case of severe environmental degradation caused by synergistic pressures of high intensity, plant recovery without measures to support remediation takes at least 30 years

Species composition, seasonal abundance and population structure of chaetognaths in Admiralty Bay (Antarctic)

Although chaetognaths inhabiting polar ecosystems are relatively well known, there are few reports on their functioning in the Antarctic coastal plankton community. The presented results provide the first comprehensive description of population structure of chaetognaths in the neritic zone west of the Antarctic Peninsula. The studies were performed on samples collected in Admiralty Bay, from December 1994 to June 1995. Following six chaetognath species were determined: Eukrohnia hamata, E. bathypelagica, E. fowleri, Pseudosagitta gazellae, P. maxima and Solidosagitta marri. The representatives of Eukrohnia were observed almost throughout the research period, whereas those of Pseudosagitta and Solidosagitta were found only during first four months of our investigation. Eukrohnia hamata showed a strong dominance in respect to abundance (max. 445 ind./1000 m3). The mean abundance of all taxa significantly fluctuated in the study period and across weeks. Generally, all species were represented by the first three maturity stages (I-III), individuals stage IV occurred sporadically, and mature specimens (stage V) were not recorded at all. Morphometric analysis of the most abundant species showed distinct differences in their total length and body proportions. Our findings may suggest that chaetognath populations in Admiralty Bay are migrant, dependent on the inflow of water from the Bransfield Strait, but to prove this statement further, round year study is necessary

Culturomics Approach to Identify Diabetic Foot Infection Bacteria

The main goal of the study was to evaluate the usefulness of the culturomics approach in the reflection of diabetic foot infections (DFIs) microbial compositions in Poland. Superficial swab samples of 16 diabetic foot infection patients (Provincial Polyclinical Hospital in Toruń, Poland) were subjected to culturing using 10 different types of media followed by the identification via the matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) and Biotyper platform. Identified 204 bacterial isolates representing 18 different species—mostly Enterococcus faecalis (63%) and Staphylococcus aureus (44%). Most of the infections (81%) demonstrated a polymicrobial character. Great differences in the species coverage, the number of isolated Gram-positive and Gram-negative bacteria, and the efficiency of the microbial composition reflection between the investigated media were revealed. The use of commonly recommended blood agar allowed to reveal only 53% of the entire microbial composition of the diabetic foot infection samples, which considerably improved when the chromagar orientation and vancomycin-resistant enterococi agar were applied. In general, efficiency increased in the following order: selective < universal < enriched < differential media. Performed analysis also revealed the impact of the culture media composition on the molecular profiles of some bacterial species, such as Corynebacterium striatum, Proteus mirabilis or Morganella morganii that contributed to the differences in the identification quality. Our results indicated that the culturomics approach can significantly improve the accuracy of the reflection of the diabetic foot infections microbial compositions as long as an appropriate media set is selected. The chromagar orientation and vancomycin-resistant enterococi agar media which were used for the first time to study diabetic foot infection microbial profiles demonstrate the highest utility in the culturomics approach and should be included in further studies directed to find a faster and more reliable diabetic foot infection diagnostic tool

Modeling of phytoextraction efficiency of microbially stimulated <i>Salix dasyclados</i> L. in the soils with different speciation of heavy metals

<p>Bioaugmentation of soils with selected microorganisms during phytoextraction can be the key solution for successful bioremediation and should be accurately calculated for different physicochemical soil properties and heavy metal availability to guarantee the universality of this method. Equally important is the development of an accurate prediction tool to manage phytoremediation process. The main objective of this study was to evaluate the role of three metallotolerant siderophore-producing <i>Streptomyces</i> sp. B1–B3 strains in the phytoremediation of heavy metals with the use of <i>S. dasyclados</i> L. growing in four metalliferrous soils as well as modeling the efficiency of this process based on physicochemical and microbiological properties of the soils using artificial neural network (ANN) analysis. The bacterial inoculation of plants significantly stimulated plant biomass and reduced oxidative stress. Moreover, the bacteria affected the speciation of heavy metals and finally their mobility, thereby enhancing the uptake and bioaccumulation of Zn, Cd, and Pb in the biomass. The best capacity for phytoextraction was noted for strain B1, which had the highest siderophore secretion ability. Finally, ANN model permitted to predict efficiency of phytoextraction based on both the physicochemical properties of the soils and the activity of the soil microbiota with high precision.</p

Analysis of bacteria associated with honeys of different geographical and botanical origin using two different identification approaches: MALDI-TOF MS and 16S rDNA PCR technique.

In the presented work identification of microorganisms isolated from various types of honeys was performed. Martix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and 16S rDNA sequencing were applied to study environmental bacteria strains.With both approches, problematic spore-forming Bacillus spp, but also Staphylococcus spp., Lysinibacillus spp., Micrococcus spp. and Brevibacillus spp were identified. However, application of spectrometric technique allows for an unambiguous distinction between species/species groups e.g.B. subtilis or B. cereus groups. MALDI TOF MS and 16S rDNA sequencing allow for construction of phyloproteomic and phylogenetic trees of identified bacterial species. Furthermore, the correlation beetween physicochemical properties, geographical and botanical origin and the presence bacterial species in honey samples were investigated

Identification of Bacteria Associated with Post-Operative Wounds of Patients with the Use of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Approach

The bacterial infection of post-operative wounds is a common health problem. Therefore, it is important to investigate fast and accurate methods of identifying bacteria in clinical samples. The aim of the study was to analyse the use of the MALDI-TOF MS technique to identify microorganism wounds that are difficult to heal. The most common bacteria are Escherichia coli, Staphylococcus spp., and Enterococcus spp. We also demonstrate the effect of culture conditions, such as the used growth medium (solid: Brain Heart Infusion Agar, Mueller Hilton Agar, Glucose Bromocresol Purple Agar, and Vancomycin Resistance Enterococci Agar Base and liquid: Tryptic Soy Broth and BACTEC Lytic/10 Anaerobic/F), the incubation time (4, 6, and 24h), and the method of the preparation of bacterial protein extracts (the standard method based on the Bruker guideline, the Sepsityper method) to identify factors and the quality of the obtained mass spectra. By comparing the protein profiles of bacteria from patients not treated with antibiotics to those treated with antibiotics based on the presence/absence of specific signals and using the UniProt platform, it was possible to predict the probable mechanism of the action of the antibiotic used and the mechanism of drug resistance