The use of experimental data and the application of a kinetic model to determine the subcellular distribution of Zn/Cd/Ni/Cu over time in Indian mustard

National Natural Science Foundation of China [21077056, 41071212, 41071302, 41171193]; Program for New Century Excellent Talents in University [NCET-12-0326]; Natural Science Foundation of Jiangsu Province [BE2011780]; Fundamental Research Funds for the Central Universities of China [KYZ201109]; Fok Ying Tung Education Foundation [122045]The precise subcellular distribution of metallic elements in plants may have a significant impact on metal detoxification and bioaccumulation processes. In this study, we report the subcellular distribution of metallic elements in Indian mustard (Brassica juncea) and the application of a kinetic model to confirm the experimental data by aqua-culture experiment. The metals in Indian mustard were determined on the 3rd, 5th, 9th, and 14th day. The results showed that concentrations of Zn, Cd, and Ni in root samples increased with exposure time, reaching maximum values of 13 161, 9602, and 864 mg kg(-1) (DW), respectively, at the 9th day, while concentrations of Cu in root samples reached a maximum value of 17 566 mg kg(-1) (DW) on the 14th day. A decrease in the concentration of Cu/Zn/Cd/Ni from roots to stem/leaf was observed, however, the difference in metal concentration between the roots and stem/leaf was much greater for Cu than for the other three metals. The majority of these metals were present in the cell walls, organelles, and the soluble fraction, with only minor amounts present in the cell membranes. The Zn, Cd, Ni and Cu existed mainly in the cell walls of the root on the 14th day, reaching maximum values of 424, 483, 23 and 839 mg kg(-1) (fresh samples), respectively. Nearly all (90%) of the Cu existed in the cell water-soluble fraction of stems and leaves on the 3rd day, however, 44%-52% of Cu was present in the cell water-soluble fraction on the 14th day. There were also 25%-35% of Zn, 53%-60% of Cd and 70%-73% of Ni in the cell water-soluble fraction of stems and leaves. The kinetic model adequately described the experimental data for accumulation by roots, stems, and leaves. The majority of the data for the subcellular fractions of roots and stems fit the equations well. The accumulation rate constant k and the maximum accumulation capacity y(max) of plant and subcellular fractions were calculated. Our results provide insight into the accumulation and subsequent subcellular distribution of metals in plants in hydroponics culture and will be valuable for further studies of phytoremediation

Gypenosides improve the intestinal microbiota of non-alcoholic fatty liver in mice and alleviate its progression

Abstract(#br)Gypenosides (GP) are a type of traditional Chinese medicine (TCM) extracted from plants and commonly applied for treatment of metabolic diseases. This study aims to explore the effects of GP extracts on alleviating non-alcoholic fatty liver disease (NAFLD). In this experiment, C57BL/6 J mice were randomly assigned into normal diet control (ND), HFHC (high-fat and high-cholesterol) and HFHC + GP (GP) groups. Mice in HFHC group were fed HFHC diet combined with fructose drinking water for 12 weeks to induce the animal model of NAFLD, followed by ordinary drinking water until the end of the experiment. In the HFHC + GP group, mice were fed HFHC diet combined with fructose drinking water for 12 weeks, followed by GP-containing drinking water till the end. Mouse body weight was measured weekly. After animal procedures, mouse liver and serum samples were collected. It is shown that GP administration reduced body weight, enhanced the sensitivity to insulin resistance (IR) and decreased serum levels of ALT, AST and TG in NAFLD mice. In addition, GP treatment alleviated steatohepatitis, and downregulated ACC1, PPARγ, CD36, APOC3 and MTTP levels in mice fed with HFHC diet. Furthermore, GP treatment markedly improved intestinal microbiota, and reduced relative abundance ratio of Firmicutes / Bacteroidetes in the feces of NAFLD mice. Our results suggested that GP alleviated NAFLD in mice through improving intestinal microbiota

Gypenosides improve the intestinal microbiota of non-alcoholic fatty liver in mice and alleviate its progression.

Gypenosides (GP) are a type of traditional Chinese medicine (TCM) extracted from plants and commonly applied for treatment of metabolic diseases. This study aims to explore the effects of GP extracts on alleviating non-alcoholic fatty liver disease (NAFLD). In this experiment, C57BL/6 J mice were randomly assigned into normal diet control (ND), HFHC (high-fat and high-cholesterol) and HFHC + GP (GP) groups. Mice in HFHC group were fed HFHC diet combined with fructose drinking water for 12 weeks to induce the animal model of NAFLD, followed by ordinary drinking water until the end of the experiment. In the HFHC + GP group, mice were fed HFHC diet combined with fructose drinking water for 12 weeks, followed by GP-containing drinking water till the end. Mouse body weight was measured weekly. After animal procedures, mouse liver and serum samples were collected. It is shown that GP administration reduced body weight, enhanced the sensitivity to insulin resistance (IR) and decreased serum levels of ALT, AST and TG in NAFLD mice. In addition, GP treatment alleviated steatohepatitis, and downregulated ACC1, PPARγ, CD36, APOC3 and MTTP levels in mice fed with HFHC diet. Furthermore, GP treatment markedly improved intestinal microbiota, and reduced relative abundance ratio of Firmicutes / Bacteroidetes in the feces of NAFLD mice. Our results suggested that GP alleviated NAFLD in mice through improving intestinal microbiota

Bioelectricity generation from the decolorization of reactive blue 19 by using microbial fuel cell.

Microbial fuel cell (MFC) was compared to conventional biological techniques for decolorization of anthraquinone dye, reactive blue 19 (RB19) with simultaneous electricity generation. With 50 mg/L of RB19 in the anode chamber as a fuel, the MFC achieved 89% decolorization efficiency of RB19 within 48 h, compared with 51 and 55% decolorization efficiency achieved by aerobic and anaerobic techniques, respectively. The cyclic voltammetry results showed that RB19 could promote the electron transfer and redox reaction on the surface of anode. The RB19 decolorization process can be described by first-order kinetics, and the decolorization rate decreased with the increase of RB19 concentration. The high-throughput 16S rRNA sequencing analysis indicated significant microbial community shift in the MFC. At phylum level, the majority of sequences belong to Proteobacteria, accounting from 23 to 84% of the total reads in each bacterium community. At genus level, the MFC contained two types of microorganisms in general such as electrochemically active and decolorization bacteria. Overall, MFC is an effective method for anthraquinone dye treatment with simultaneous energy recovery. The 16S rRNA revealed that there were two major functioning microbial communities in the MFC such as electricity-producing and RB19-degrading bacteria which synergistically worked on RB19 degradation

Bazhu Decoction, a Traditional Chinese Medical Formula, Ameliorates Cognitive Deficits in the 5xFAD Mouse Model of Alzheimer's Disease.

Alzheimer’s disease (AD) is the most common neurodegenerative disorder associated with aging. There are currently no effective treatments for AD. Bazhu decoction (BZD), a traditional Chinese medicine (TCM) formula, has been employed clinically to alleviate AD. However, the underlying molecular mechanisms are still unclear. Here we found that middle- and high-doses of BZD ameliorated the behavioral aspects of 5xFAD transgenic mice in elevated plus maze, Y maze and Morris water maze tests. Moreover, BZD reduced the protein levels of BACE1 and PS1, resulting in a reduction of Aβ plaques. We also identified a beneficial effect of BZD on oxidative stress by attenuating MDA levels and SOD activity in the brains of 5xFAD mice. Together, these results indicate that BZD produces a dose-dependent positive effect on 5xFAD transgenic mouse model by decreasing APP processing and Aβ plaques, and by ameliorating oxidative damage. BZD may play a protective role in the cognitive and anxiety impairments and may be a complementary therapeutic option for AD

A microscale protein NMR sample screening pipeline

As part of efforts to develop improved methods for NMR protein sample preparation and structure determination, the Northeast Structural Genomics Consortium (NESG) has implemented an NMR screening pipeline for protein target selection, construct optimization, and buffer optimization, incorporating efficient microscale NMR screening of proteins using a micro-cryoprobe. The process is feasible because the newest generation probe requires only small amounts of protein, typically 30–200 μg in 8–35 μl volume. Extensive automation has been made possible by the combination of database tools, mechanization of key process steps, and the use of a micro-cryoprobe that gives excellent data while requiring little optimization and manual setup. In this perspective, we describe the overall process used by the NESG for screening NMR samples as part of a sample optimization process, assessing optimal construct design and solution conditions, as well as for determining protein rotational correlation times in order to assess protein oligomerization states. Database infrastructure has been developed to allow for flexible implementation of new screening protocols and harvesting of the resulting output. The NESG micro NMR screening pipeline has also been used for detergent screening of membrane proteins. Descriptions of the individual steps in the NESG NMR sample design, production, and screening pipeline are presented in the format of a standard operating procedure

Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment

BACKGROUND: Structural variations (SVs) in individual genomes are major determinants of complex traits, including adaptability to environmental variables. The Mongolian and Hainan cattle breeds in East Asia are of taurine and indicine origins that have evolved to adapt to cold and hot environments, respectively. However, few studies have investigated SVs in East Asian cattle genomes and their roles in environmental adaptation, and little is known about adaptively introgressed SVs in East Asian cattle. RESULTS: In this study, we examine the roles of SVs in the climate adaptation of these two cattle lineages by generating highly contiguous chromosome-scale genome assemblies. Comparison of the two assemblies along with 18 Mongolian and Hainan cattle genomes obtained by long-read sequencing data provides a catalog of 123,898 nonredundant SVs. Several SVs detected from long reads are in exons of genes associated with epidermal differentiation, skin barrier, and bovine tuberculosis resistance. Functional investigations show that a 108-bp exonic insertion in SPN may affect the uptake of Mycobacterium tuberculosis by macrophages, which might contribute to the low susceptibility of Hainan cattle to bovine tuberculosis. Genotyping of 373 whole genomes from 39 breeds identifies 2610 SVs that are differentiated along a "north-south" gradient in China and overlap with 862 related genes that are enriched in pathways related to environmental adaptation. We identify 1457 Chinese indicine-stratified SVs that possibly originate from banteng and are frequent in Chinese indicine cattle. CONCLUSIONS: Our findings highlight the unique contribution of SVs in East Asian cattle to environmental adaptation and disease resistance