30,156 research outputs found

    Nā€²-(Propan-2-ylĀ­idene)nicotinohydrazide

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    Crystals of the title compound, C9H11N3O, were obtained from a condensation reaction of nicotinohydrazide and acetone. In the molĀ­ecular structure, the pyridine ring is oriented at a dihedral angle of 36.28ā€…(10)Ā° with respect to the amide plane. In the crystal structure, molĀ­ecules are linked via Nā€”Hā‹ÆO hydrogen bonds, forming chains

    Protein Evolution in Yeast Transcription Factor Subnetworks

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    When averaged over the full yeast proteinā€“protein interaction and transcriptional regulatory networks, protein hubs with many interaction partners or regulators tend to evolve significantly more slowly due to increased negative selection. However, genome-wide analysis of protein evolution in the subnetworks of associations involving yeast transcription factors (TFs) reveals that TF hubs do not tend to evolve significantly more slowly than TF non-hubs. This result holds for all four major types of TF hubs: interaction hubs, regulatory in-degree and out-degree hubs, as well as co-regulatory hubs that jointly regulate target genes with many TFs. Furthermore, TF regulatory in-degree hubs tend to evolve significantly more quickly than TF non-hubs. Most importantly, the correlations between evolutionary rate (KA/KS) and degrees for TFs are significantly more positive than those for generic proteins within the same global proteinā€“protein interaction and transcriptional regulatory networks. Compared to generic protein hubs, TF hubs operate at a higher level in the hierarchical structure of cellular networks, and hence experience additional evolutionary forces (relaxed negative selection or positive selection through network rewiring). The striking difference between the evolution of TF hubs and generic protein hubs demonstrates that components within the same global network can be governed by distinct organizational and evolutionary principles.National Natural Science Foundation of China (10801131, 10631070); National Science Foundation (DGE-0654108); Pharmaceutical Research and Manufacturers of America Foundation (Research Starter Grant in Informatics); K. C. Wong Education Foundatio

    BL-MNE: Emerging Heterogeneous Social Network Embedding through Broad Learning with Aligned Autoencoder

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    Network embedding aims at projecting the network data into a low-dimensional feature space, where the nodes are represented as a unique feature vector and network structure can be effectively preserved. In recent years, more and more online application service sites can be represented as massive and complex networks, which are extremely challenging for traditional machine learning algorithms to deal with. Effective embedding of the complex network data into low-dimension feature representation can both save data storage space and enable traditional machine learning algorithms applicable to handle the network data. Network embedding performance will degrade greatly if the networks are of a sparse structure, like the emerging networks with few connections. In this paper, we propose to learn the embedding representation for a target emerging network based on the broad learning setting, where the emerging network is aligned with other external mature networks at the same time. To solve the problem, a new embedding framework, namely "Deep alIgned autoencoder based eMbEdding" (DIME), is introduced in this paper. DIME handles the diverse link and attribute in a unified analytic based on broad learning, and introduces the multiple aligned attributed heterogeneous social network concept to model the network structure. A set of meta paths are introduced in the paper, which define various kinds of connections among users via the heterogeneous link and attribute information. The closeness among users in the networks are defined as the meta proximity scores, which will be fed into DIME to learn the embedding vectors of users in the emerging network. Extensive experiments have been done on real-world aligned social networks, which have demonstrated the effectiveness of DIME in learning the emerging network embedding vectors.Comment: 10 pages, 9 figures, 4 tables. Full paper is accepted by ICDM 2017, In: Proceedings of the 2017 IEEE International Conference on Data Mining
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