Characterization of 13 multi-drug resistant Salmonella serovars from different broiler chickens associated with those of human isolates

<p>Abstract</p> <p>Background</p> <p><it>Salmonella </it>are frequently isolated from chickens and their products. Prevalent serogroups and serovars of <it>Salmonella </it>as well as their genotypes and antibiograms were determined for cloacal samples from 1595 chickens. To understand the possible serovar and H antigens for transmission between chicken and human, serovars and their H antigens of 164 chicken and 5314 human isolates were compared.</p> <p>Results</p> <p>Prevalence of <it>Salmonella </it>differed among chicken lines and ages. Chicken and human isolates belonged mainly to serogroup B, C1, C2-C3, D, and E. 13 serovars and 66 serovars were identified for chicken and human isolates respectively. The common serovars for chicken and human isolates were <it>S</it>. Typhimurium, <it>S</it>. Enteritidis, <it>S</it>. Albany, <it>S</it>. Derby, and <it>S</it>. Anatum and shared common H1 antigens "g complex; i; e,h; and z4,z24" and H2 antigens "1 complex and -". In human isolates, H1 antigen "i" and H2 antigen "-" were common in all serogroups. In chicken, antimicrobial susceptibility differed among serogroups, serovars and three counties. All isolates were susceptible to cefazolin and ceftriaxone, but highly resistant to ampicillin, chloramphenicol, flumequine, streptomycin, sulfamethoxazole-trimethoprim, and tetracycline. Except those isolates of serogroup C1 of Chick group and serogroup G, all isolates were multi-drug resistance. Only <it>S</it>. Kubacha, <it>S</it>. Typhimurium, <it>S</it>. Grampian, and <it>S</it>. Mons were resistant to ciprofloxacin and/or enrofloxacin.</p> <p>Conclusion</p> <p>In chicken, prevalent serogroups and serovars were associated with chicken ages, lines and regions; and flouroquinolone-resistant and MDR isolates emerged. H1 antigens "g complex and i" and H2 antigens "1 complex and -" might be important for transmission of <it>Salmonella </it>between chicken and human.</p

Quantifying uncertainty of taxonomic placement in DNA barcoding and metabarcoding

A crucial step in the use of DNA markers for biodiversity surveys is the assignment of Linnaean taxonomies (species, genus, etc.) to sequence reads. This allows the use of all the information known based on the taxonomic names. Taxonomic placement of DNA barcoding sequences is inherently probabilistic because DNA sequences contain errors, because there is natural variation among sequences within a species, and because reference data bases are incomplete and can have false annotations. However, most existing bioinformatics methods for taxonomic placement either exclude uncertainty, or quantify it using metrics other than probability. In this paper we evaluate the performance of the recently proposed probabilistic taxonomic placement method PROTAX by applying it to both annotated reference sequence data as well as to unknown environmental data. Our four case studies include contrasting taxonomic groups (fungi, bacteria, mammals and insects), variation in the length and quality of the barcoding sequences (from individually Sanger-sequenced sequences to short Illumina reads), variation in the structures and sizes of the taxonomies (800–130 000 species) and variation in the completeness of the reference data bases (representing 15–100% of known species). Our results demonstrate that PROTAX yields essentially unbiased probabilities of taxonomic placement, which means its quantification of species identification uncertainty is reliable. As expected, the accuracy of taxonomic placement increases with increasing coverage of taxonomic and reference sequence data bases, and with increasing ratio of genetic variation among taxonomic levels over within taxonomic levels. We conclude that reliable species-level identification from environmental samples is still challenging and that neglecting identification uncertainty can lead to spurious inference. A key aim for future research is the completion of taxonomic and reference sequence data bases and making these two types of data compatible

Grey Signal Predictor and Fuzzy Controls for Active Vehicle Suspension Systems via Lyapunov Theory

In order to investigate and decide that the vehicle asymptotic vibration stability and improved comfort, the present paper deals with a fuzzy neural network (NN) evolved bat algorithm (EBA) backstepping adaptive controller based on grey signal predictors. The Lyapunov theory and backstepping method is utilized to appraise the math nonlinearity in the active vehicle suspension as well as acquire the final simulation control law in order to track the suitable signal. The Discrete Grey Model DGM (2,1) have been thus used to acquire prospect movement of the suspension system, so that the command controller can prove the convergence and the stability of the entire formula through the Lyapunov-like lemma. The controller overspreads the application range of mechanical elastic vehicle wheel (MEVW) as well as lays a favorable theoretic foundation in adapting to new wheels

Global Incidence and mortality of oesophageal cancer and their correlation with socioeconomic indicators temporal patterns and trends in 41 countries

Oesophageal cancers (adenocarcinomas [AC] and squamous cell carcinomas [SCC]) are characterized by high incidence/mortality in many countries. We aimed to delineate its global incidence and mortality, and studied whether socioeconomic development and its incidence rate were correlated. The age-standardized rates (ASRs) of incidence and mortality of this medical condition in 2012 for 184 nations from the GLOBOCAN database; national databases capturing incidence rates, and the WHO mortality database were examined. Their correlations with two indicators of socioeconomic development were evaluated. Joinpoint regression analysis was used to generate trends. The ratio between the ASR of AC and SCC was strongly correlated with HDI (r = 0.535 [men]; r = 0.661 [women]) and GDP (r = 0.594 [men]; r = 0.550 [women], both p &lt; 0.001). Countries that reported the largest reduction in incidence in male included Poland (Average Annual Percent Change [AAPC] = −7.1, 95%C.I. = −12,−1.9) and Singapore (AAPC = −5.8, 95%C.I. = −9.5,−1.9), whereas for women the greatest decline was seen in Singapore (AAPC = −12.3, 95%C.I. = −17.3,−6.9) and China (AAPC = −5.6, 95%C.I. = −7.6,−3.4). The Philippines (AAPC = 4.3, 95%C.I. = 2,6.6) and Bulgaria (AAPC = 2.8, 95%C.I. = 0.5,5.1) had a significant mortality increase in men; whilst Columbia (AAPC = −6.1, 95%C.I. = −7.5,−4.6) and Slovenia (AAPC = −4.6, 95%C.I. = −7.9,−1.3) reported mortality decline in women. These findings inform individuals at increased risk for primary prevention

Analytical Simulations for Shaking Table Tests of a Full Scale Buckling Restrained Braced Frame

AbstractThe seismic response tests of a full-scale five-story passively-controlled steel building have been conducted on the EDefense shaking table in Japan in March 2009. Before the tests, a blind prediction contest was held to allow researchers and practitioners from all over the world to construct numerical model and predict the dynamic responses of the building frame equipped with buckling restrained braces or viscous dampers. This paper presents the response predictions made before the tests of the buckling restrained braced frame (BRBF). A three-dimensional shell finite element subassembly model was constructed to investigate the stiffness of the buckling-restrained brace end joint. The dynamic test results of the sample steel dampers provided by the organizer were used to calibrate the BRB strength in the numerical model. The details of the numerical model for the composite beam, hollow structural section column, and the beam-to-column panel zone are described. Base on the numerical and test analyses, effective numerical models are presented and the recommended nonlinear modeling techniques for BRBF are provided

Simulation of Beam-Beam Effects and Tevatron Experience

Effects of electromagnetic interactions of colliding bunches in the Tevatron had a variety of manifestations in beam dynamics presenting vast opportunities for development of simulation models and tools. In this paper the computer code for simulation of weak-strong beam-beam effects in hadron colliders is described. We report the collider operational experience relevant to beam-beam interactions, explain major effects limiting the collider performance and compare results of observations and measurements with simulations.Comment: 23 pages, 17 figure

Landslides affecting sedimentary characteristics of reservoir basin

Typhoons Aere (2004) and Matsa (2005) caused high nephelometric turbidity in the Shihmen reservoir in northern Taiwan, jeopardizing the operation of the reservoir for several days, and ultimately impacting the living conditions and economy of the downstream residents. The torrential rains caused landslides and debris flows in upland areas, and flowed into riverbeds, likely contributing significantly to the suspended sediment yields in the reservoir. This investigation elucidates how upland landslides affect sediment attributes in the reservoir basin. Study methods including field observations, spatial analysis in GIS and aerial photo interpretation are adopted to trace the sediment sources and contributing factors to the landslide. Torrential rains induced landslides and debris-flows upland, causing river incisions and soil erosion in landslide areas lacking vegetation. These factors, together with the conditions of the engineered structures and geologic vulnerabilities of the area, caused suspended sediment yield in the reservoir. The high nephelometric turbidity could potentially reoccur, with masses of landslide-derived sediment remaining upland and in the riverbed

Non-Markovian entanglement dynamics in coupled superconducting qubit systems

We theoretically analyze the entanglement generation and dynamics by coupled Josephson junction qubits. Considering a current-biased Josephson junction (CBJJ), we generate maximally entangled states. In particular, the entanglement dynamics is considered as a function of the decoherence parameters, such as the temperature, the ratio $r\equiv\omega_c/\omega_0$ between the reservoir cutoff frequency $\omega_c$ and the system oscillator frequency $\omega_0$, % between $\omega_0$ the characteristic frequency of the %quantum system of interest, and $\omega_c$ the cut-off frequency of %Ohmic reservoir and the energy levels split of the superconducting circuits in the non-Markovian master equation. We analyzed the entanglement sudden death (ESD) and entanglement sudden birth (ESB) by the non-Markovian master equation. Furthermore, we find that the larger the ratio $r$ and the thermal energy $k_BT$, the shorter the decoherence. In this superconducting qubit system we find that the entanglement can be controlled and the ESD time can be prolonged by adjusting the temperature and the superconducting phases $\Phi_k$ which split the energy levels.Comment: 13 pages, 3 figure