A Meta-Analysis of the Use of Genetically Modified Cotton and Its Conventional in Agronomy Aspect and Economic Merits

Rising the area of growing Genetically Modified (GM) cotton mostly derived from the yield gain and income gain both GM cotton and conventional cotton is affected by seed cost, pesticide cost, management and labor cost. Therefore, planting GM cotton should be considering both agronomy aspect in yield gain and economic dimension in income gain. Those aspects are not only for GM cotton but also for conventional cotton. This paper is a meta-analysis as a synthesis of current research by searching literature both peer-reviewed and non peer-reviewed. A meta-analysis depicted that individual study mostly favor GM cotton in yield gain, seed cost and pesticide cost. However, in terms of pesticide cost a meta-analysis prone to favor non GM cotton. Moreover, a meta-analysis revealed that the positive impact in the differences of GM cotton and conventional cotton as the evidence of the publication is highly significant. Key Words : Genetically Modified, Cotton, Conventional, Yield, Income, Gain, Meta-Analysi

Changes in DNA methylation assessed by genomic bisulfite sequencing suggest a role for DNA methylation in cotton fruiting branch development

Cotton plant architecture, including fruit branch formation and flowering pattern, influences plant light exploitation, cotton yield and planting cost. DNA methylation has been widely observed at different developmental stages in both plants and animals and is associated with regulation of gene expression, chromatin remodelling, genome protection and other functions. Here, we investigated the global epigenetic reprogramming during the development of fruiting branches and floral buds at three developmental stages: the seedling stage, the pre-squaring stage and the squaring stage. We first identified 22 cotton genes which potentially encode DNA methyltransferases and demethylases. Among them, the homologous genes of CMT, DRM2 and MET1 were upregulated at pre-squaring and squaring stages, suggesting that DNA methylation is involved in the development of floral buds and fruit branches. Although the global methylation at all of three developmental stages was not changed, the CHG-type methylation of non-expressed genes was higher than those of expressed genes. In addition, we found that the expression of the homologous genes of the key circadian rhythm regulators, including CRY, LHY and CO, was associated with changes of DNA methylation at three developmental stages

GWAS Analysis and QTL Identification of Fiber Quality Traits and Yield Components in Upland Cotton Using Enriched High-Density SNP Markers

It is of great importance to identify quantitative trait loci (QTL) controlling fiber quality traits and yield components for future marker-assisted selection (MAS) and candidate gene function identifications. In this study, two kinds of traits in 231 F6:8 recombinant inbred lines (RILs), derived from an intraspecific cross between Xinluzao24, a cultivar with elite fiber quality, and Lumianyan28, a cultivar with wide adaptability and high yield potential, were measured in nine environments. This RIL population was genotyped by 122 SSR and 4729 SNP markers, which were also used to construct the genetic map. The map covered 2477.99 cM of hirsutum genome, with an average marker interval of 0.51 cM between adjacent markers. As a result, a total of 134 QTLs for fiber quality traits and 122 QTLs for yield components were detected, with 2.18–24.45 and 1.68–28.27% proportions of the phenotypic variance explained by each QTL, respectively. Among these QTLs, 57 were detected in at least two environments, named stable QTLs. A total of 209 and 139 quantitative trait nucleotides (QTNs) were associated with fiber quality traits and yield components by four multilocus genome-wide association studies methods, respectively. Among these QTNs, 74 were detected by at least two algorithms or in two environments. The candidate genes harbored by 57 stable QTLs were compared with the ones associated with QTN, and 35 common candidate genes were found. Among these common candidate genes, four were possibly “pleiotropic.” This study provided important information for MAS and candidate gene functional studies

Functional analysis of the GbDWARF14 gene associated with branching development in cotton

Plant architecture, including branching pattern, is an important agronomic trait of cotton crops. In recent years, strigolactones (SLs) have been considered important plant hormones that regulate branch development. In some species such as Arabidopsis, DWARF14 is an unconventional receptor that plays an important role in the SL signaling pathway. However, studies on SL receptors in cotton are still lacking. Here, we cloned and analysed the structure of the GbD14 gene in Gossypium barbadense and found that it contains the domains necessary for a SL receptor. The GbD14 gene was expressed primarily in the roots, leaves and vascular bundles, and the GbD14 protein was determined via GFP to localize to the cytoplasm and nucleus. Gene expression analysis revealed that the GbD14 gene not only responded to SL signals but also was differentially expressed between cotton plants whose types of branching differed. In particular, GbD14 was expressed mainly in the axillary buds of normal-branching cotton, while it was expressed the most in the leaves of nulliplex-branch cotton. In cotton, the GbD14 gene can be induced by SL and other plant hormones, such as indoleacetic acid, abscisic acid, and jasmonic acid. Compared with wild-type Arabidopsis, GbD14-overexpressing Arabidopsis responded more rapidly to SL signals. Moreover, we also found that GbD14 can rescue the multi-branched phenotype of Arabidopsis Atd14 mutants. Our results indicate that the function of GbD14 is similar to that of AtD14, and GbD14 may be a receptor for SL in cotton and involved in regulating branch development. This research provides a theoretical basis for a profound understanding of the molecular mechanism of branch development and ideal plant architecture for cotton breeding improvements

Genome sequence of the cultivated cotton <i>Gossypium arboreum</i>

The complex allotetraploid nature of the cotton genome (AADD; 2n = 52) makes genetic, genomic and functional analyses extremely challenging. Here we sequenced and assembled the Gossypium arboreum (AA; 2n = 26) genome, a putative contributor of the A subgenome. A total of 193.6 Gb of clean sequence covering the genome by 112.6-fold was obtained by paired-end sequencing. We further anchored and oriented 90.4% of the assembly on 13 pseudochromosomes and found that 68.5% of the genome is occupied by repetitive DNA sequences. We predicted 41,330 protein-coding genes in G. arboreum. Two whole-genome duplications were shared by G. arboreum and Gossypium raimondii before speciation. Insertions of long terminal repeats in the past 5 million years are responsible for the twofold difference in the sizes of these genomes. Comparative transcriptome studies showed the key role of the nucleotide binding site (NBS)-encoding gene family in resistance to Verticillium dahliae and the involvement of ethylene in the development of cotton fiber cells.Genetics &amp; HereditySCI(E)[email protected]; [email protected]; [email protected]

Pore-throat characteristics of tight sandstone reservoirs composed of gravity flow sediments: Yingcheng Formation, Longfengshan sag, China

© 2018 Elsevier B.V. The Lower Cretaceous Yingcheng Formation in the Longfengshan sag (Songliao Basin, China) represents a typical tight sandstone reservoir that hosts large accumulations of hydrocarbons. The lacustrine sandstones mainly reflect gravity flow deposits making up various lithofacies displaying varying degrees of heterogeneity. This study reports on the links among gravity flow type, diagenetic overprinting and pore-throat characteristics that control reservoir quality. Core observations, especially grain size variations and related sedimentary structures are used to differentiate types of gravity flows. Microscopic observations, cathodoluminescence, scanning electron microscopy, pressure-controlled mercury injection tests and rate-controlled mercury injection tests are used to determine the mineralogy, sedimentary composition and pore-throat characteristics of the tight sandstones. In the study area, the gravity flows are divided into muddy debris flows, sandy debris flows, high-density turbidity flows, low-density turbidity flows and mud density flows. The petrophysical properties of these different gravity flow sediments reflect a range of permeability and porosity characteristics. Because of their mud-dominated textures and related weak compressive strength, mud density flows and muddy debris flows become ineffective as reservoirs during burial. In contrast, for approximately similar burial depths, turbidites and sandy debris flows show better reservoir quality. However, reservoir units with high porosities still possess considerable heterogeneity; this is especially true of some sandy debris flows that possess large amounts of secondary pores but which are not charged with hydrocarbons. In particular, in some poorly sorted sandy debris flows that are characterized by high contents of fine-grained matrix, some of the pore throats are blocked by matrix material. Moreover, the dissolution of feldspars and volcanic debris led to the formation of authigenic clays and quartz, which preferentially developed in pore throats with small radii. This process significantly reduced permeability. Overall, the permeabilities of the sandy debris flows are generally lower than those of the turbidites. Due to their relatively large-radius pore throats, turbidites can be categorized as potential effective hydrocarbon reservoirs in the study area. This research provides significant insights into the characteristics of pore throats within tight reservoirs consisting of gravity flow sediments in lacustrine basinal settings.status: publishe