Federal Recovery Funds Allocated

Figure S1. Overview of the informatics pipeline used to the identify lincRNAs in goat. (PDF 216 kb

Additional file 4: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Figure S3. Characterization of the HF development-related gene expression in skin. Note: A. Number of RNA-seq reads obtained from the 15 samples at five time points. B. Histogram presenting differentially expressed genes with an adjusted P value ≤0.05 for at least one of the ten comparisons (May vs. Jun, May vs. Aug, May vs. Sep, May vs. Oct, Jun vs. Aug, Jun vs. Sep, Jun vs. Oct, Aug vs. Sep, Aug vs. Oct, and Sep vs. Oct). (PDF 275 kb

Additional file 10: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Table S6. Primer sequences for RT-qPCR. (XLSX 55 kb

Additional file 5: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Figure S4. Comparison of the expression patterns of selected lincRNAs and protein-coding genes detected in RNA-seq (red line) and RT-qPCR (blue line) assays revealing a high correlation between the two methods. Note: The log2 ratios of the expression changes during Oct relative to the other time points were calculated and plotted (the ratio was set to 0 for the normal condition). The expression levels of the selected protein-coding genes were normalized against that of β-actin. The expression levels of the selected lincRNAs were normalized against that of SDHA, UBC and YWHAZ. The R values (Pearson correlation coefficients) across the different time points are presented for each gene. (PDF 543 kb

Additional file 6: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Table S2. Gene function enrichment analysis based on the GO annotation of DEGs. (XLSX 56 kb

Additional file 9: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Table S5. GTF file for goat lincRNAs. (XLSX 813 kb

Additional file 2: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Figure S1. Overview of the informatics pipeline used to the identify lincRNAs in goat. (PDF 216 kb

Additional file 1: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Table S1. Details on the RNA-seq datasets. (XLSX 162 kb