Bayesian detection of embryonic gene expression onset in C. elegans

To study how a zygote develops into an embryo with different tissues, large-scale 4D confocal movies of C. elegans embryos have been produced recently by experimental biologists. However, the lack of principled statistical methods for the highly noisy data has hindered the comprehensive analysis of these data sets. We introduced a probabilistic change point model on the cell lineage tree to estimate the embryonic gene expression onset time. A Bayesian approach is used to fit the 4D confocal movies data to the model. Subsequent classification methods are used to decide a model selection threshold and further refine the expression onset time from the branch level to the specific cell time level. Extensive simulations have shown the high accuracy of our method. Its application on real data yields both previously known results and new findings.Comment: Published at http://dx.doi.org/10.1214/15-AOAS820 in the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Dynamic Knowledge Routing Network For Target-Guided Open-Domain Conversation

Target-guided open-domain conversation aims to proactively and naturally guide a dialogue agent or human to achieve specific goals, topics or keywords during open-ended conversations. Existing methods mainly rely on single-turn datadriven learning and simple target-guided strategy without considering semantic or factual knowledge relations among candidate topics/keywords. This results in poor transition smoothness and low success rate. In this work, we adopt a structured approach that controls the intended content of system responses by introducing coarse-grained keywords, attains smooth conversation transition through turn-level supervised learning and knowledge relations between candidate keywords, and drives an conversation towards an specified target with discourse-level guiding strategy. Specially, we propose a novel dynamic knowledge routing network (DKRN) which considers semantic knowledge relations among candidate keywords for accurate next topic prediction of next discourse. With the help of more accurate keyword prediction, our keyword-augmented response retrieval module can achieve better retrieval performance and more meaningful conversations. Besides, we also propose a novel dual discourse-level target-guided strategy to guide conversations to reach their goals smoothly with higher success rate. Furthermore, to push the research boundary of target-guided open-domain conversation to match real-world scenarios better, we introduce a new large-scale Chinese target-guided open-domain conversation dataset (more than 900K conversations) crawled from Sina Weibo. Quantitative and human evaluations show our method can produce meaningful and effective target-guided conversations, significantly improving over other state-of-the-art methods by more than 20% in success rate and more than 0.6 in average smoothness score.Comment: 8 pages, 2 figues, 6tables, AAAI2020, fix our model's abbreviatio

Enhance the Visual Representation via Discrete Adversarial Training

Adversarial Training (AT), which is commonly accepted as one of the most effective approaches defending against adversarial examples, can largely harm the standard performance, thus has limited usefulness on industrial-scale production and applications. Surprisingly, this phenomenon is totally opposite in Natural Language Processing (NLP) task, where AT can even benefit for generalization. We notice the merit of AT in NLP tasks could derive from the discrete and symbolic input space. For borrowing the advantage from NLP-style AT, we propose Discrete Adversarial Training (DAT). DAT leverages VQGAN to reform the image data to discrete text-like inputs, i.e. visual words. Then it minimizes the maximal risk on such discrete images with symbolic adversarial perturbations. We further give an explanation from the perspective of distribution to demonstrate the effectiveness of DAT. As a plug-and-play technique for enhancing the visual representation, DAT achieves significant improvement on multiple tasks including image classification, object detection and self-supervised learning. Especially, the model pre-trained with Masked Auto-Encoding (MAE) and fine-tuned by our DAT without extra data can get 31.40 mCE on ImageNet-C and 32.77% top-1 accuracy on Stylized-ImageNet, building the new state-of-the-art. The code will be available at https://github.com/alibaba/easyrobust.Comment: Accepted to NeurIPS 2022, https://github.com/alibaba/easyrobus