Organization and signal processing of the descending tracts in the cervical spinal cord

This dissertation addresses the research for the development of spinal cord-computer interface (SCCI). The main objective of SCCI is to generate voluntary motor control signals for individuals with spinal cord injury (SCI). In the neuroscience aspect, organization of the fibers in the descending tracts of the dorsolateral funiculus of the cervical spinal cord was investigated in cats. The spinal cord was penetrated with silicon substrate microelectrodes at 400 μm intervals in the medio-lateral direction at the C5/C6 and C6/C7 segmental borders. The stimulus consisted of a 20 ms train of charge-balanced biphasic pulses at 330 Hz. The evoked activities from selected forelimb muscles were acquired into computer. The muscle contractions were usually in the form of short twitches. In both segmental borders, the activation threshold was relatively higher in the middle of the dorsolateral funiculus. The majority of the muscles studied had a dorsal or ventral concentration of the activation points. The distal muscles were mostly activated in the ventro-lateral aspect of the funiculus, while the elbow muscle maps spread to both dorsal and ventral sides. These results show a functional organization in both cervical segments although there is an extensive overlap between the areas dedicated for each forelimb muscle. In the neural signal processing aspect, the feasibility of increasing the channel separation for a neural interface was investigated using the blind source separation (BSS) technique. Multi-contact spinal cord recordings were assumed to be a linear mixture of independent source signals inside the spinal cord. The results from simulated multi-channel recordings show a perfect channel separation. Further investigation was performed on real spinal cord recordings by eliminating the secondary sources, using the FastICA algorithm. The results suggest that the information rate of a spinal cord interface can be improved by separating the neural recordings into its independent components and selecting the ones with the largest distance between them. Comparison between ICA and PCA reveals that ICA is more suitable for this application. This study constructs the first step in the development of SCCI. The results demonstrate that SCCI is feasible both in the neuroscience and signal processing perspectives

Functional geometry alignment and localization of brain areas

Matching functional brain regions across individuals is a challenging task, largely due to the variability in their location and extent. It is particularly difficult, but highly relevant, for patients with pathologies such as brain tumors, which can cause substantial reorganization of functional systems. In such cases spatial registration based on anatomical data is only of limited value if the goal is to establish correspondences of functional areas among different individuals, or to localize potentially displaced active regions. Rather than rely on spatial alignment, we propose to perform registration in an alternative space whose geometry is governed by the functional interaction patterns in the brain. We first embed each brain into a functional map that reflects connectivity patterns during a fMRI experiment. The resulting functional maps are then registered, and the obtained correspondences are propagated back to the two brains. In application to a language fMRI experiment, our preliminary results suggest that the proposed method yields improved functional correspondences across subjects. This advantage is pronounced for subjects with tumors that affect the language areas and thus cause spatial reorganization of the functional regions.National Institutes of Health (U.S.) (P01 CA067165)National Institutes of Health (U.S.) (U41RR019703)National Institutes of Health (U.S.) (NIBIB NAMIC U54- EB005149)National Institutes of Health (U.S.) (NCRR NAC P41-RR13218)National Science Foundation (U.S.) (CAREER Grant 0642971)National Science Foundation (U.S.) (Grant IIS/CRCNS 0904625

Decoupling function and anatomy in atlases of functional connectivity patterns: Language mapping in tumor patients

In this paper we construct an atlas that summarizes functional connectivity characteristics of a cognitive process from a population of individuals. The atlas encodes functional connectivity structure in a low-dimensional embedding space that is derived from a diffusion process on a graph that represents correlations of fMRI time courses. The functional atlas is decoupled from the anatomical space, and thus can represent functional networks with variable spatial distribution in a population. In practice the atlas is represented by a common prior distribution for the embedded fMRI signals of all subjects. We derive an algorithm for fitting this generative model to the observed data in a population. Our results in a language fMRI study demonstrate that the method identifies coherent and functionally equivalent regions across subjects. The method also successfully maps functional networks from a healthy population used as a training set to individuals whose language networks are affected by tumors.National Science Foundation (U.S.). Division of Information & Intelligent Systems (Collaborative Research in Computational Neuroscience Grant 0904625)National Science Foundation (U.S.) (CAREER Grant 0642971)National Institutes of Health (U.S.) (National Center for Research Resources (U.S.)/Neuroimaging Analysis Center (U.S.) P41-RR13218)National Institutes of Health (U.S.) (National Institute for Biomedical Imaging and Bioengineering (U.S.)/Neuroimaging Analysis Center (U.S.) P41-EB-015902)National Institutes of Health (U.S.) (National Institute for Biomedical Imaging and Bioengineering (U.S.)/National Alliance for Medical Image Computing (U.S.) U54-EB005149)National Institutes of Health (U.S.) (U41RR019703)National Institutes of Health (U.S.) (Eunice Kennedy Shriver National Institute of Child Health and Human Development (U.S.) R01HD067312)National Institutes of Health (U.S.) (P01CA067165)Brain Science FoundationKlarman Family FoundationEuropean Commission (FP7/2007–2013) n°257528 (KHRESMOI))European Commission (330003 (FABRIC))Austrian Science Fund (P 22578-B19 (PULMARCH)

Altered functional connectivity in lesional peduncular hallucinosis with REM sleep behavior disorder

Brainstem lesions causing peduncular hallucinosis (PH) produce vivid visual hallucinations occasionally accompanied by sleep disorders. Overlapping brainstem regions modulate visual pathways and REM sleep functions via gating of thalamocortical networks. A 66-year-old man with paroxysmal atrial fibrillation developed abrupt–onset complex visual hallucinations with preserved insight and violent dream enactment behavior. Brain MRI showed restricted diffusion in the left rostrodorsal pons suggestive of an acute ischemic stroke. REM sleep behavior disorder (RBD) was diagnosed on polysomnography. We investigated the integrity of ponto-geniculate-occipital circuits with seed-based resting-state functional connectivity MRI (rs-fcMRI) in this patient compared to 46 controls. Rs-fcMRI revealed significantly reduced functional connectivity between the lesion and lateral geniculate nuclei (LGN), and between LGN and visual association cortex compared to controls. Conversely, functional connectivity between brainstem and visual association cortex, and between visual association cortex and prefrontal cortex (PFC) was significantly increased in the patient. Focal damage to the rostrodorsal pons is sufficient to cause RBD and PH in humans, suggesting an overlapping mechanism in both syndromes. This lesion produced a pattern of altered functional connectivity consistent with disrupted visual cortex connectivity via de-afferentation of thalamocortical pathways

A combined fMRI and DTI examination of functional language lateralization and arcuate fasciculus structure: Effects of degree versus direction of hand preference Author links open overlay panel

The present study examined the relationship between hand preference degree and direction, functional language lateralization in Broca’s and Wernicke’s areas, and structural measures of the arcuate fasciculus. Results revealed an effect of degree of hand preference on arcuate fasciculus structure, such that consistently-handed individuals, regardless of the direction of hand preference, demonstrated the most asymmetric arcuate fasciculus, with larger left versus right arcuate, as measured by DTI. Functional language lateralization in Wernicke’s area, measured via fMRI, was related to arcuate fasciculus volume in consistent-left-handers only, and only in people who were not right hemisphere lateralized for language; given the small sample size for this finding, the future investigation is warranted. Results suggest handedness degree may be an important variable to investigate in the context of neuroanatomical asymmetries

Defining language networks from resting-state fMRI for surgical planning-a feasibility study

Presurgical language mapping for patients with lesions close to language areas is critical to neurosurgical decision-making for preservation of language function. As a clinical noninvasive imaging technique, functional MRI (fMRI) is used to identify language areas by measuring blood-oxygen-level dependent (BOLD) signal change while patients perform carefully timed language vs. control tasks. This task-based fMRI critically depends on task performance, excluding many patients who have difficulty performing language tasks due to neurologic deficits. On the basis of recent discovery of resting-state fMRI (rs-fMRI), we propose a “task-free” paradigm acquiring fMRI data when patients simply are at rest. This paradigm is less demanding for patients to perform and easier for technologists to administer. We investigated the feasibility of this approach in right-handed healthy control subjects. First, group independent component analysis (ICA) was applied on the training group (14 subjects) to identify group level language components based on expert rating results. Then, four empirically and structurally defined language network templates were assessed for their ability to identify language components from individuals' ICA output of the testing group (18 subjects) based on spatial similarity analysis. Results suggest that it is feasible to extract language activations from rs-fMRI at the individual subject level, and two empirically defined templates (that focuses on frontal language areas and that incorporates both frontal and temporal language areas) demonstrated the best performance. We propose a semi-automated language component identification procedure and discuss the practical concerns and suggestions for this approach to be used in clinical fMRI language mapping

Reconstruction of the arcuate fasciculus for surgical planning in the setting of peritumoral edema using two-tensor unscented Kalman filter tractography

Background: Diffusion imaging tractography is increasingly used to trace critical fiber tracts in brain tumor patients to reduce the risk of post-operative neurological deficit. However, the effects of peritumoral edema pose a challenge to conventional tractography using the standard diffusion tensor model. The aim of this study was to present a novel technique using a two-tensor unscented Kalman filter (UKF) algorithm to track the arcuate fasciculus (AF) in brain tumor patients with peritumoral edema. Methods: Ten right-handed patients with left-sided brain tumors in the vicinity of language-related cortex and evidence of significant peritumoral edema were retrospectively selected for the study. All patients underwent 3-Tesla magnetic resonance imaging (MRI) including a diffusion-weighted dataset with 31 directions. Fiber tractography was performed using both single-tensor streamline and two-tensor UKF tractography. A two-regions-of-interest approach was applied to perform the delineation of the AF. Results from the two different tractography algorithms were compared visually and quantitatively. Results: Using single-tensor streamline tractography, the AF appeared disrupted in four patients and contained few fibers in the remaining six patients. Two-tensor UKF tractography delineated an AF that traversed edematous brain areas in all patients. The volume of the AF was significantly larger on two-tensor UKF than on single-tensor streamline tractography (p < 0.01). Conclusions: Two-tensor UKF tractography provides the ability to trace a larger volume AF than single-tensor streamline tractography in the setting of peritumoral edema in brain tumor patients

DynAMoS: The Dynamic Affective Movie Clip Database for Subjectivity Analysis

In this paper, we describe the design, collection, and validation of a new video database that includes holistic and dynamic emotion ratings from 83 participants watching 22 affective movie clips. In contrast to previous work in Affective Computing, which pursued a single “ground truth” label for the affective content of each moment of each video (e.g., by averaging the ratings of 2 to 7 trained participants), we embrace the subjectivity inherent to emotional experiences and provide the full distribution of all participants’ ratings (with an average of 76.7 raters per video). We argue that this choice represents a paradigm shift with the potential to unlock new research directions, generate new hypotheses, and inspire novel methods in the Affective Computing community. We also describe several interdisciplinary use cases for the database: to provide dynamic norms for emotion elicitation studies (e.g., in psychology, medicine, and neuroscience), to train and test affective content analysis algorithms (e.g., for dynamic emotion recognition, video summarization, and movie recommendation), and to study subjectivity in emotional reactions (e.g., to identify moments of emotional ambiguity or ambivalence within movies, identify predictors of subjectivity, and develop personalized affective content analysis algorithms). The database is made freely available to researchers for noncommercial use at https://dynamos.mgb.org

Preparation and Isothermal Oxidation Behavior of Zr-Doped, Pt-Modified Aluminide Coating Prepared by a Hybrid Process

To take advantage of the synergistic effects of Pt and Zr, a kind of Zr-doped, Pt-modified aluminide coating has been prepared by a hybrid process, first electroplating a Pt layer and then co-depositing Zr and Al elements by an above-the-pack process. The microstructure and isothermal oxidation behavior of the coating has been studied, using a Pt-modified aluminide coating as a reference. Results showed that the Zr-doped, Pt-modified aluminide coating was primarily composed of β-(Ni,Pt)Al phase, with small amounts of PtAl2- and Zr-rich phases dispersed in it. The addition of Zr diminished voids on the coating surface since Zr could hinder the growth of β-NiAl grains. It also helped to increase the spalling resistance of the oxide scale and reduce the oxidation rate, which made the Zr-doped, Pt-modified aluminide coating possess better oxidation resistance than the reference Pt-modified aluminide coating at the temperature of 1100 °C