17 research outputs found

    QQ plot of the results from logistic regression on the Northwestern European cohort.

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    <p>The x axis is –log10 of the expected P-value and the y axis is –log10 of the observed P-values. Black solid lines denote the null distribution. The bulk of the values (red dots) closely follow the expectation under the null model (black line) showing that there is no significant inflation of test statistic due to factors such as population stratification. The tail end shows significant deviation from null model illustrating that there are a few observed significant associations.</p

    Genetic risk score GRS<sub><i>GWAS</i></sub> for schizophrenia.

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    <p>The <i>x-</i>axis shows the effect size for the 15 SNPs for which data were available in the PGC schizophrenia dataset comprising the GRS<sub><i>GWAS</i></sub> influencing levels of CRP, with corresponding standard error bars. The <i>y-</i>axis shows the log OR of the GRS<sub><i>GWAS</i></sub> SNPs for schizophrenia (SCZ) with corresponding standard error bars. The effect estimate of CRP level on disease risk is represented by the red solid line, with gradient α. The 95% CI of this α estimate is represented by the grey dashed lines. The included SNPs are shown by Arabic numbering: #1, rs2847281 (gene: <i>PTPN2</i>; chromosome: 18; basepair position: 12811593); #2, rs340029 (<i>RORA</i>; 15; 58682257); #3, rs6901250 (<i>GPRC6A</i>; 6; 117220718); #4, rs10745954 (<i>ASCL1</i>; 12; 102007224); #5, rs4705952 (<i>IRF1</i>; 5; 131867517); #6, rs12037222 (<i>PABPC4</i>; 1; 39837548); #7, rs12239046 (<i>NLRP3</i>; 1; 245668218); #8, rs6734238 (<i>IL1F10</i>; 2; 113557501); #9, rs13233571 (<i>BCL7B</i>; 7; 72609167); #11, rs1260326 (<i>GCKR</i>; 2; 27584444); #12, rs4129267 (<i>IL6R</i>; 1; 152692888); #13, rs1800961 (<i>HNF4A</i>; 20; 42475778); #14, rs4420065 (<i>LEPR</i>; 1; 5934049); #15, rs10521222 (<i>SALL1</i>; 16; 49716211); 12; 119905190); #17, rs2794520 (<i>CRP</i>; 1; 157945440). The three SNPs of #10, rs9987289 (<i>PPP1R3B</i>; 8; 9220768); #16, rs1183910 (<i>HNF1A</i>; and #18, rs4420638 (<i>APOC1</i>; 19; 50114786) were not present in the data of the PGC.</p

    The effect of the CRP genetic risk score instrument of 18 SNPs associated with CRP (GRS<sub><i>GWAS</i></sub>) on somatic and neuropsychiatric outcomes.

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    <p>The effect of the CRP genetic risk score instrument of 18 SNPs associated with CRP (GRS<sub><i>GWAS</i></sub>) on somatic and neuropsychiatric outcomes.</p
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