Additional file 2: of Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis

Exploration by Principal Component Analysis (PCA) of transcriptomic data (all expressed genes) for each tissue to identify outlier samples. Out of 48, 46, 48 and 44 arrays for liver, adipose, muscle and PBMC respectively, 2, 1, 2 and 1 outlier microarrays were identified by PCA using all the expressed genes. For muscle and PBMC, an additional sample was removed because of an abnormal high number of Agilent-flagged spots or an abnormal background distribution on the array. (PPTX 173 kb

Additional file 4 of Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis

DEG in liver between the two diets and some features. Array_FC and Array_Pvalue provide the HF/LF expression ratio and the p-value adjusted for the multiple test obtained with the microarray technology. qPCR_FC and qPCR_Pvalue provide the HF/LF expression ratio and the p-value obtained with the RT-qPCR technology. (XLSX 70 kb