Bioconjugated nanomaterials for monitoring food contamination

Maintaining food safety and hygiene standards is top priority and challenge for farmers, food industries, governments and food technologists working in the food supply chain. Pesticides, toxins, veterinary drug residues, foodborne pathogens and many other harmful chemicals that may be present in a vast array of food products, due to various stages of their production like packaging and transport, constitute a global health problem that requires powerful and innovative technologies allowing constant and accurate detection of food products from production to consumption. Recent progress in generation of specific synthetic oligonucleotides against food contaminants has provided a new insight into the current sensor technologies, where these functional synthetic oligonucleotides, so-called aptamers, have been successfully combined with nanomaterials for rapid and cost-effective detection of several substances related to the food contamination, such as antibiotics, mycotoxins, heavy metals, carcinogenic dyes, pesticides, pathogens and other plastic products used for food packaging. Unique characteristics of aptamers over antibodies, such as in vitro selection, chemical and thermal stability, small size and ease of labeling have laid the solid foundation for exploring aptamers further in multiplexed food monitoring systems. In this chapter, we reviewed the application of aptamer-conjugated nanomaterials in food safety surveillance as well as the conventional techniques used for food safety monitoring in order to provide a comprehensive and comparative approach

Post traumatic stress and anxiety in patients with acute coronary syndrome

Background: Acute coronary syndrome (ACS) is one of the diseases in which psychiatric complications develop, with initiation of treatment, and having cardiac, patient-specific behavioral problems. The aim of this study was to investigate symptoms of posttraumatic stress disorder (PTSD) and anxiety in patients that experience ACS. The relationship between PTSD symptoms and anxiety and the relationship between these psychological conditions and certain personal characteristics were reviewed. Methods: In this study, which was prospective and descriptive, 215 patients who experienced ACS were evaluated in the first month after ACS. The data in the research was collected using the Patient Identification Form, Posttraumatic Stress Disorder Symptoms Scale Self-Report (PSS-SR) and Spielberg State-Trait Anxiety Inventory (STAI-T). Results: 70.2% of the patients were male and 31.2% were retired. The PSS-SR mean score was 28.40 ± 10.42 and the mean STAI-T score was 57.65 ± 12:37. Between the STAI and PSS-SR there was a statistically significant positive correlation. In women, workers, grade 1 obese patients, those using alcohol, and those with chronic disease the average PSS-SR scores were significantly higher. Housewives, illiterate individuals and 1st degree obese patients had a higher average score of anxiety, as well as patients with chronic diseases and higher alcohol use.

Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR

The unique ability to rapidly amplify low copy number DNA has made in vitro Polymerase Chain Reaction one of the most fundamental techniques in modern biology. In order to harness this technique to its full potential, certain obstacles such as nonspecific by-products, low yield and complexity of GC rich and long genomic DNA amplification need to be surmounted. As in vitro PCR does not have any regulatory mechanisms unlike its counterpart in vivo DNA replication machinery, scientists often use a number of additives like glycerol, betaine, dimethyl sulphoxide and formamide in order to achieve the perfection of in vivo systems. In the last two decades nanotechnology has provided excellent solutions to many classical problems in various scientific fields including biotechnology and recently the PCR technique has begun to benefit from this so called “Nano Era”. In this review, the impacts of several nanomaterials on PCR efficiency, specificity and fidelity are described in accordance with the recent literature. Putative interaction mechanisms between nanomaterials and primary PCR components are also addressed in a comprehensive manner

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

Wild emmer wheat, Triticum turgidum ssp. dicoccoides is the wild relative of Triticum turgidum, the progenitor of durum and bread wheat, and maintains a rich allelic diversity among its wild populations. The lack of adequate genetic and genomic resources, however, restricts its exploitation in wheat improvement. Here, we report next-generation sequencing of the flow-sorted chromosome 5B of T. dicoccoides to shed light into its genome structure, function and organization by exploring the repetitive elements, protein-encoding genes and putative microRNA and tRNA coding sequences. Comparative analyses with its counterparts in modern and wild wheats suggest clues into the B-genome evolution. Syntenic relationships of chromosome 5B with the model grasses can facilitate further efforts for fine-mapping of traits of interest. Mapping of 5B sequences onto the root transcriptomes of two additional T. dicoccoides genotypes, with contrasting drought tolerances, revealed several thousands of single nucleotide polymorphisms, of which 584 shared polymorphisms on 228 transcripts were specific to the drought-tolerant genotype. To our knowledge, this study presents the largest genomics resource currently available for T. dicoccoides, which, we believe, will encourage the exploitation of its genetic and genomic potential for wheat improvement to meet the increasing demand to feed the world

Characterization of FcγRIa (CD64) as a ligand molecule for site-specific IgG1 capture: A side-by-side comparison with protein a

Fc γreceptors (FcγRs) are one of the structures that can initiate effector function for monoclonal antibodies. FcγRIa has the highest affinity toward IgG1-type monoclonal antibodies among all FcγRs. In this study, a comprehensive characterization was performed for FcγRIa as a potential affinity ligand for IgG1-type monoclonal antibody binding. The binding interactions were assessed with the SPR technique using different immobilization techniques such as EDC-NHS coupling, streptavidin-biotin interaction, and His-tagged FcγRIa capture. The His-tagged FcγRIa capture was the most convenient method based on assay repeatability. Next, a crude IgG1 sample and its fractions with different monomer contents obtained from protein A affinity chromatography were used to evaluate FcγRIa protein in terms of monoclonal antibody binding capacity. The samples were also compared with a protein A-immobilized chip (a frequently used affinity ligand) for IgG1 binding responses. The antibody binding capacity of the protein A-immobilized chip surface was significantly better than that of the FcγRIa-immobilized chip surface due to its 5 Ig binding domains. The antibody binding responses changed similarly with protein A depending on the monomer content of the sample. Finally, a different configuration was used to assess the binding affinity of free FcγRs (FcγRIa, FcγRIIa, and FcγRIIIa) to three different immobilized IgGs by immobilizing protein L to the chip surface. Unlike previous immobilization techniques tested where the FcγRIa was utilized as a ligand, nonimmobilized or free FcγRIa resulted in a significantly higher antibody binding response than free protein A. In this configuration, kinetics data of FcγRI revealed that the association rate (ka 50-80 × 105 M-1 s-1) increased in comparison to His capture method (1.9-2.4 × 105 M-1 s-1). In addition, the dissociation rate (kd 10-5 s-1) seemed slower over the His capture method (10-4 s-1) and provided stability on the chip surface during the dissociation phase. The KD values for FcγRIa were found in the picomolar range (2.1-10.33 pM from steady-state affinity analysis and 37.5-46.2 pM from kinetic analysis) for IgG1-type antibodies. FcγRIa possesses comparable ligand potential as well as protein A. Even though the protein A-immobilized surface bound more antibodies than the FcγRIa-captured surface, FcγRIa presented a significant antibody binding capacity in protein L configuration. The results suggest FcγRIa protein as a potential ligand for site-oriented immobilization of IgG1-type monoclonal antibodies, and it needs further performance investigation on different surfaces and interfaces for applications such as sensing and antibody purification

Temperature and pH-dependent behaviors of mAb drugs: A case study for trastuzumab

The distortions in the high-order structure of therapeutic monoclonal antibodies (mAbs) under different environmental conditions acutely affect mAb stability, resulting in altered safety, efficacy, and shelf-life profiles. The overall stability of mAbs depends on many factors, and it requires complementary techniques for an in-depth analysis. The stability of mAbs can be characterized by differential centrifugal sedimentation (DCS), differential scanning calorimetry (DSC), differential scanning fluorimetry (DSF), and size exclusion chromatography (SEC) techniques. In this report, temperature-ramped dynamic light scattering (DLS), and circular dichroism (CD) spectroscopy were employed as complementary tools to show how temperature and pH affect the aggregation of a model mAb, trastuzumab, in solution. The results showed that the aggregation onset temperature of trastuzumab defined by DLS was 75 degrees C, which decreases the amount of beta-sheets and causes a slight increase in helix structures. Moreover, the melting temperature of trastuzumab was determined to be between 80-83 degrees C by temperature-ramped CD spectrophotometry, which is in line with the Tm of trastuzumab's Fab region tested with DSC. Thus, unfolding and aggregation of trastuzumab start simultaneously at 75 degrees C, and unfolding triggers the aggregation. The temperature-ramped CD and DLS methods are robust tools to determine the thermal behavior of biosimilars in various solution conditions. Their complementary usage provides solid scientific background for regulatory applications and a better understanding of mAb instability and its relationship with structural changes

Functionalized graphitic carbon nitrides for environmental and sensing applications

Graphitic carbon nitride (g-C3N4) is a metal-free semiconductor that has been widely regarded as a promising candidate for sustainable energy production or storage. In recent years, g-C3N4 has become the center of attention by virtue of its impressive properties, such as being inexpensive, easily fabricable, nontoxic, highly stable, and environment friendly. Herein, the recent research developments related to g-C3N4 are outlined, which sheds light on its future prospective. Various synthetic methods and their impact on the properties of g-C3N4 are detailed, along with discussion on frequently used characterization methods. Different approaches for g-C3N4 surface functionalization, mainly categorized under covalent and noncovalent strategies, are outlined. Moreover, the processing methods of g-C3N4, such as g-C3N4-based thin films, hierarchical, and hybrid structures, are explored. Next, compared with the extensively studied energy-related applications of the modified g-C(3)N(4)s, relatively less-examined areas, such as environmental and sensing, are presented. By highlighting the strong potential of these materials and the existing research gaps, new researchers are encouraged to produce functional g-C3N4-based materials using diverse surface modification and processing routes.UK Research & Innovation (UKRI) Engineering & Physical Sciences Research Council (EPSRC) ; Royal Society-Newton Advanced Fellowship Grant ; Leverhulme Trus

REAL-TIME WATER QUALITY MONITORING OF AN ARTIFICIAL LAKE USING A PORTABLE, AFFORDABLE, SIMPLE, ARDUINO-BASED OPEN SOURCE SENSOR

Water quality assessment is vital to identify existing problems and any changes that emerge in water sources over a period of time. Conventional water quality monitoring systems remain to be limited to on-site sample collection and further analysis in environmental laboratories. The progress in Arduino-based low-cost and open-source hardware has paved the way for the development of low-cost, portable, and on-site measuring platforms. In this work, we have assembled an Arduino-based open-source water testing platform out of commercially available sensors and controllers. The water testing system was powered by a 9 V battery and had the capability of measuring water turbidity, acidity, and temperature on-site in real-time. The calibration and validation studies were carried out to assess the measurement capabilities of turbidity and pH sensors in the lab using calibration samples and UV-Vis-NIR absorption spectroscopy. The water quality platform was tested in an artificial lake that is located at Sabanci University Campus (Istanbul, Turkey), which serves as a reservoir for treated wastewaters and rainwater. Untreated wastewater samples were collected from the wastewater treatment station of the university for comparison. The measurements performed on several locations along the coast of the artificial lake were also validated in the laboratory. The water testing platform showed significant potential for miniaturization and portability of such analytical platforms for on-site environmental monitoring

Plasmonic titanium nitride nanohole arrays for refractometric sensing

Group IVB metal nitrides have attracted great interest as alternative plasmonic materials. Among them, titanium nitride (TiN) stands out due to the ease of deposition and relative abundance of Ti compared to those of Zr and Hf metals. Even though they do not have Au or Ag-like plasmonic characteristics, they offer many advantages, from high mechanical stability to refractory behavior and complementary metal oxide semiconductor-compatible fabrication to tunable electrical/optical properties. In this study, we utilized reactive RF magnetron sputtering to deposit plasmonic TiN thin films. The flow rate and ratio of Ar/N2 and oxygen scavenging methods were optimized to improve the plasmonic performance of TiN thin films. The stoichiometry and structure of the TiN thin films were thoroughly investigated to assess the viability of the optimized operation procedures. To assess the plasmonic performance of TiN thin films, periodic nanohole arrays were perforated on TiN thin films by using electron beam lithography and reactive ion etching methods. The resulting TiN periodic nanohole array with varying periods was investigated by using a custom microspectroscopy setup for both reflection and transmission characteristics in various media to underline the efficacy of TiN for refractometric sensing.101111321 ; EP/Y030273/