MNDA dimerizes through a complex motif involving an N-terminal basic region

AbstractHuman myeloid cell nuclear differentiation antigen (MNDA) is a myelomonocytic lineage-specific protein that influences gene expression through interactions with other nuclear proteins and transcription factors. MNDA also self-associates and chemical cross-linking was used to demonstrate that MNDA forms a dimer. C-terminal and internal deletion mutants were used to identify two regions in the N-terminal half of MNDA essential for self-association. One region contains an imperfect leucine zipper and the second is highly enriched in basic residues. The sequences that are essential for dimerization are separated by a highly basic amphipathic α-helical region which was not required for dimerization

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis

Chromatin immunoprecipitation (ChIP) analysis is widely used to identify the locations in genomes occupied by transcription factors (TFs). The approach involves chemical cross-linking of DNA with associated proteins, fragmentation of chromatin by sonication or enzymatic digestion, immunoprecipitation of the fragments containing the protein of interest, and then PCR or hybridization analysis to characterize and quantify the genomic sequences enriched. We developed a computational model of quantitative ChIP analysis to elucidate the factors contributing to the method’s resolution. The most important variables identified by the model were, in order of importance, the spacing of the PCR primers, the mean length of the chromatin fragments, and, unexpectedly, the type of fragment width distribution, with very small DNA fragments and smaller amplicons providing the best resolution of TF binding. One of the major predictions of the model was also validated experimentally

Stemness And Chemotherapeutic Drug Resistance Induced By Eif5a2 Overexpression In Esophageal Squamous Cell Carcinoma

Esophageal squamous cell carcinoma (ESCC) is one of the most lethal malignancies of the digestive tract in East Asian countries. Multimodal therapies, including adjuvant chemotherapy and neo-adjuvant chemotherapy, have become more often used for patients with advanced ESCC. However, the chemotherapy effect is often limited by patients' drug resistance. This study demonstrated that EIF5A2 (eukaryotic translation initiation factor 5A2) overexpression induced stemness and chemoresistance in ESCC cells. We showed that EIF5A2 overexpression in ESCC cells resulted in increased chemoresistance to 5-fluorouracil (5-FU), docetaxel and taxol. In contrast, shRNAs suppressing eIF5A2 increased tumor sensitivity to these chemotherapeutic drugs. In addition, EIF5A2 overexpression was correlated with a poorer overall survival in patients with ESCC who underwent taxane-based chemotherapy after esophagectomy (P > 0.05). Based on these results, we suggest that EIF5A2 could be a predictive biomarker for selecting appropriate chemo-treatment for ESCC patients and EIF5A2 inhibitors might be considered as combination therapy to enhance chemosensitivity in patients with ESCC.published_or_final_versio

Experimental demonstration of diffusion limitations on resolution and SNR in MR microscopy

Magnetic resonance microscopy images at cellular resolution (< 10 microns) are limited by diffusion. SNR and spatial resolution suffer from the dephasing of transverse magnetization caused by diffusion of spins in strong gradients. Such effects may be reduced by using phase encoding instead of frequency encoding readout gradients. Demonstration of the benefits of phase encoding are lacking, and the conditions in which it is preferred are not clearly established. We quantify when phase encoding outperforms a readout gradient with emphasis on the detrimental effects of diffusion on SNR and resolution. A 15.2T MRI scanner, with 1 T/m gradients, and micro solenoid RF coils < 1 mm in diameter, were used to quantify diffusion effects on resolution and SNR of frequency and phase encoded acquisitions. Frequency and phase encoding resolution and SNR per square root time were calculated and measured for images at the diffusion limited resolution. The point-spread-function was measured for phase and frequency encoding using additional constant time gradients with voxels 3-15 microns. The effect of diffusion during the readout gradient on SNR was experimentally demonstrated. The achieved resolutions of frequency and phase encoded acquisitions were measured via the point-spread-function. SNR per square root time and actual resolution were calculated for a wide range of gradient amplitudes, diffusion coefficients, and relaxation properties. The results provide a practical guide on how to choose between phase and frequency encoding. Images of excised rat spinal cord at 10 x 10 microns in-plane demonstrate benefits of phase encoding in the form of higher measured resolution and SNR vs the same image acquired with a conventional readout. We demonstrate the extent to which phase encoding outperforms readout gradients in SNR and resolution over a wide range of voxel sizes, sample, and hardware properties.Comment: 36 pages, 9 figures, 1 table, and 4 supplemental figures. Submitted to Journal of Magnetic Resonance; cleaned up metadata, fixed heading typ

Relayed nuclear Overhauser enhancement sensitivity to membrane Cho phospholipids

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/155956/1/mrm28258_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/155956/2/mrm28258.pd

Prognostic value of inflammatory nutritional scores in locally advanced esophageal squamous cell carcinoma patients undergoing neoadjuvant chemoimmunotherapy: a multicenter study in China

ObjectiveThis study investigates the prognostic significance of inflammatory nutritional scores in patients with locally advanced esophageal squamous cell carcinoma (LA-ESCC) undergoing neoadjuvant chemoimmunotherapy.MethodsA total of 190 LA-ESCC patients were recruited from three medical centers across China. Pre-treatment laboratory tests were utilized to calculate inflammatory nutritional scores. LASSO regression and multivariate logistic regression analyses were conducted to pinpoint predictors of pathological response. Kaplan-Meier and Cox regression analyses were employed to assess disease-free survival (DFS) prognostic factors.ResultsThe cohort comprised 154 males (81.05%) and 36 females (18.95%), with a median age of 61.4 years. Pathological complete response (pCR) was achieved in 17.38% of patients, while 44.78% attained major pathological response (MPR). LASSO and multivariate logistic regression analyses identified that hemoglobin, albumin, lymphocyte, and platelet (HALP) (P=0.02) as an independent predictors of MPR in LA-ESCC patients receiving neoadjuvant chemoimmunotherapy. Kaplan-Meier and log-rank tests indicated that patients with low HALP, MPR, ypT1-2, ypN0 and, ypTNM I stages had prolonged DFS (P &lt; 0.05). Furthermore, univariate and multivariate Cox regression analyses underscored HALP (P = 0.019) and ypT (P = 0.029) as independent predictive factors for DFS in ESCC.ConclusionOur study suggests that LA-ESCC patients with lower pre-treatment HALP scores exhibit improved pathological response and reduced recurrence rate. As a comprehensive index of inflammatory nutritional status, pre-treatment HALP may be a reliable prognostic marker in ESCC patients undergoing neoadjuvant chemoimmunotherapy

Measurement of electrical properties of biological cells using a dielectrophoretic levitation system

Bibliography: p. 105-109

The Comparison of Two ELISA Kit for the Detection of Microcystin Proficiency Testing Samples

There are more than 90 related compounds produced by cyanobacteria that are highly toxic hepatotoxins to humans and animals. Algal contamination of drinking water sources from Lake Erie caused potential health hazards in the tap water of Toledo, Ohio in 2014. Water from Lake Erie contained 60-80% Microcystin-LR, 10-25% Microcystin-RR, and 5-15% Microcystin-YR. Microcystin-LR is the most toxic, RR is half as toxic as the LR variant, and YR is between the two. Immunoassays used to detect these toxins should detect most of the toxic congeners. Beacon has released an improved BX test kit which demonstrates the broader cross reactivity (CR) profile to the various Microcystin congeners. The following cross reactivity are compared with our LR kit, BX (Cat# 20-0300) / LR kits (Cat# 20-0068); Microcystin LR (100% / 100%), RR (86% / 73%), LA (41% / 2%), LF (34% / 3%), LW (29% / 4%), LY (30% / 6%), YR (53% / 58%), and Nodularin (58% / 126%). Sixteen Microcystins proficiency testing (PT) samples from 2020 to 2021 were compared with our two kits with R-square comparison 0.9956 vs 0.9894. Improved kit demonstrates broader CR profile than the previous LR kit, which is confirmed by 16 PT samples

Tracking the Migration of Dendritic Cells By In Vivo Optical Imaging1

We report herein a method to track the migration of dendritic cells (DCs) using optical imaging. With the assistance of the delivery module, fluorescein isothiocyanate (FITC) could internalize inside DCs within 15 minutes of incubation. The fluorescent signal was mostly cytoplasmic and could be detected using in vivo imaging. Furthermore, we observed that the probe did not interfere with the DCs maturation as we assessed the expression of several surface markers. The labeled DCs secreted interleukin-12 (IL-12) and tumor necrosis factor-alpha (TNF-α) and stimulated the proliferation of CD4+ T lymphocytes responding to lipopolysaccharide (LPS) stimulation. We have systematically compared the probe uptake between mature and immature DCs. The study showed that the latter phagocytosed the probe slightly better than the former. Intravital imaging of treated mice showed the migration of DCs to lymph nodes (LNs), which is confirmed by immunohistochemistry. Taken together, we demonstrated the potential use of optical imaging for tracking the migration of DCs and homing in vivo. The delivery molecules could also be used on other imaging modalities or for delivery of antigens