Additional file 7: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Table S3. Copy number of Teratorn-like viruses estimated by whole-genome shotgun sequencing data (XLSX 76 kb

Additional file 8: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Table S4. Pairwise synonymous and non-synonymous distance of piggyBac-like transposase and herpesvirus genes (XLSX 71 kb

Additional file 6: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Text S1. Sequences of representative Teratorn-like viruses identified in this study (TXT 2804 kb

Additional file 10: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Table S5. Accession numbers of genome sequence data of teleost fish species (XLSX 47 kb

Additional file 5: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Table S2. Pairwise synonymous and non-synonymous distance of herpesvirus genes and host genes among teleost fish species (XLSX 86 kb

Additional file 3: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Figure S2. Phylogenetic trees of each herpesvirus gene Maximum-likelihood trees of each herpesvirus gene are shown. Le and Gascuel’s model (2008), considering evolutionary rate differences among sites by discrete gamma distribution, was used as protein substitution model. Teratorn-like viruses are depicted in blue. The bars represent the number of substitutions per site. (PDF 143 kb

Additional file 4: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Figure S3. Evolutionary relationships of Teratorn–like viruses with other herpesviruses Maximum-likelihood trees of DNA packaging terminase gene, the only gene confidently conserved among Herpesvirales, are shown. All identified Teratorn-like viruses (a) or part of elements (b) used for phylogenetic analysis. Le and Gascuel’s model (2008), considering evolutionary rate differences among sites by discrete gamma distribution, was used for protein substitution. Species belonging to Caudovirales (bacteriophage), Herpesviridae, Malacoherpesviridae, Alloherpesviridae and Teratorn-like viruses are depicted by green, orange, purple, dark blue and light blue, respectively. Note that relationships with alloherpesviruses are different between the two analyses, presumably due to the difference in the number of sequences. The bars represent the number of substitutions per site. (PDF 138 kb

Additional file 11: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Table S6. Parameters used for phylogenetic analyses (XLSX 34 kb

Additional file 1: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Figure S1. Phylogenetic trees of all Teratorn-like virus copies obtained by blast search Neighbor-joining trees of each herpesvirus gene are shown. Kimura’s two-parameter model, assuming uniform evolutionary rates among sites, was used as nucleotide substitution model. For DNA polymerase, major capsid protein and membrane glycoprotein, phylogenetic trees were also constructed from the first and second half of the genes, since some sequences contain only a part of the coding region. For terminase, phylogenetic trees were independently constructed for each of the three exons. Numbers above the trees indicate the corresponding regions relative to the CDS of subtype 1 medaka Teratorn. Sequences marked by magenta were used for phylogenetic trees in Fig. 1b and Fig. 4b, those marked in orange were used for phylogenetic trees in Fig. S2 and S3, and those marked with cyan are same as those in Fig. 2. The bars represent the number of substitutions per site. (PDF 234 kb

Additional file 2: of Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts

Table S1. Result of tblastn search against teleost genomes (XLSX 223 kb