Association between idiopathic recurrent pregnancy loss and genetic polymorphisms in cytokine and matrix metalloproteinase genes

Objectives: Recurrent reproductive loss (RPL) is a global health issue affecting a significant number of women. Approximately half of miscarriages have an unexplained etiology. Familial aggregation and twins studies prove that some cases of the RPL could have a genetic background. Recent evidences suggest that cytokines (e.g. IL-6, TNF alpha or TGF beta) and matrix metalloproteinases (MMP) are important for maintenance of pregnancy. Single gene polymorphisms (SNP), affecting these proteins production or their function may predispose to the loss of the pregnancy. The aim of this study was to evaluate the association between the following polymorphisms of IL6 (rs1800795), TNF (rs1800629), TGFB1 (rs1800471), MMP1 (rs1799750), MMP2 (rs2285053 and rs243865), MMP3 (rs35068180), MMP9 (rs3918242) and the recurrent pregnancy loss in polish population.Material and methods: Study subjects comprised of 67 patients with a history of recurrent pregnancy loss (≥ 2 miscarriages in history) and 75 controls. The distribution of genotypes for selected polymorphisms were determined by RFLP-PCR.Results: Maternal genotypes GG TNF, or 5A/5A MMP3 may be associated with the recurrent pregnancy loss. No association between the IL6, TGFB1, MMP1, MMP2, or MMP9 studied polymorphisms and the predisposition to miscarriage was found.Conclusions: This study demonstrated a possible association between rs1800629 TNF, rs35068180 MMP3 polymorphisms and recurrent pregnancy loss

Sedimentary environment of the early pleistocene gravels of the edfu formation from the saqqara archaeological site (Egypt) – preliminary results

A gravel horizon is preserved in several locations within the world-wide known archaeological site in Saqqara (northern Egypt). It is characterized by a variable thickness, composed of coarse, quartz, quartzitic and flint pebbles, and considered to correspond to gravels of the Edfu Formation, deposited in the Early Pleistocene by the early phase of the Nile development (Protonile Phase). This relatively short (ca. 200 ka) and at the same time very dynamic period of Protonile activity during the Edfu Pluvial is one of the most poorly recognized hydrological-climatic episodes of the Quaternary in north-eastern Africa. This paper is focused on the preliminary sedimentological-petrographic characteristics of these deposits and an attempt to indicate their source areas as well as mechanisms of transportation and deposition in the context of Pleistocene pluvial episodes

Evidence of Late Cretaceous/Cenozoic strike-slip faulting within the late Palaeozoic Holy Cross Mts. Fold Belt, Poland: Józefka releasing stepover

The aim of this study was to reconstruct the location mechanism of a Triassic sandstone wedge within folded Palaeozoic rocks. A vertically oriented Buntsandstein succession (Lower Triassic) from Józefka Quarry (Holy Cross Mountains, central Poland), steeply wedged within folded Devonian carbonates, is recognised as an effect of normal faulting within a releasing stepover. The sandstone succession, corresponding to the Zagnańsk Formation in the local lithostratigraphic scheme, is represented by two complexes, interpreted as deposits of a sand-dominated alluvial plain (older complex), and coarse-grained sands and gravels of a braided river system (younger complex). The sandstone complex was primarily formed as the lowermost part of the several kilometres thick Mesozoic cover of the Holy Cross Mountains Fold Belt (HCFB), later eroded as a result of the Late Cretaceous/Paleogene uplift of the area. Tectonic analysis of the present-day position of the deformed sandstone succession shows that it is fault-bounded by a system of strike-slip and normal faults, which we interpret as a releasing stepover. Accordingly, the formation of the stepover in the central part of the late Palaeozoic HCFB is evidence of a significant role of strike-slip faulting within this tectonic unit during Late Cretaceous/Paleogene times. The faulting was probably triggered by reactivation of the terminal Palaeozoic strike-slip fault pattern along the western border of the Teisseyre–Tornquist Zone

Vitamin Status in Children with Cystic Fibrosis Transmembrane Conductance Regulator Gene Mutation

Background: The issue of vitamin metabolism in children with cystic fibrosis screen positive, inconclusive diagnosis (CFSPID) is not well known. The aim of this study was to determine the status of vitamins A, D, E, and C in the blood of a group of children with CFSPID. Material and Methods: A total of 89 children were enrolled in the study (Me: 3.6 years, 52.8% boys), as follows: 28 with CFSPID, 31 with CF (cystic fibrosis), and 30 HC (healthy children). Their blood concentrations of vitamins A, D, E, and C, and their dietary intake of these vitamins were analysed in the study groups on the basis of a three-day food diary. Results: The patients with CFSPID had significantly higher serum vitamin D (p = 0.01) and E (p = 0.04) concentrations, compared to the children with CF. None of the children with CFSPID revealed vitamin A or E deficiencies. Patients with CF had been consuming significantly higher vitamin D and E amounts (p = 0.01). The vitamin concentrations did not depend either on the pancreatic/liver function or on anthropometric parameters. In total, 32.14% of patients with CF did not cover the baseline recommended calorie intake, and 53.6% and 36% did not take the recommended vitamin E and vitamin A intake, respectively. Conclusion: Children with CF and CFSPID did not fully cover the dietary recommendations for vitamin supply, but vitamin deficiency was found only in CF

Oxidative and Antioxidative Stress Status in Children with Inflammatory Bowel Disease as a Result of a Chronic Inflammatory Process

Oxidative stress (OS) has been recently implicated in the disease pathogenesis in inflammatory bowel disease (IBD). The aim of the study was to evaluate oxidative and antioxidative stress status and the risk of the atherosclerotic process in children with IBD and functional gastrointestinal disorders (FGID). The prospective study included a group of 71 children during a period of 2 years. In all children, laboratory tests were performed and intima-media complex in the carotid artery was measured (IMC). Low values of OS were more frequent in children with IBD than in the FGID group. The average concentration of oxidized lipoprotein with average density (oxLDL) was lower in patients with IBD. Among patients with IBD, higher concentrations of oxLDL were recorded in patients with longer-duration disease and with higher concentrations of total cholesterol. In the IBD group, more often, higher concentrations of anti-oxLDL were recorded among patients with longer-duration disease. The obtained results did not support the hypothesis of total antioxidant capacity depletion and greater overall OS in patients with IBD. Patients with IBD with a longer duration of the disease have higher concentrations of oxLDL and anti-oxLDL

Lack of effect of Lactobacillus rhamnosus GG and Bifidobacterium lactis Bb12 on beta-cell function in children with newly diagnosed type 1 diabetes: a randomised controlled trial

Introduction The gut microbiota may be relevant in the development of type 1 diabetes (T1D). We examined the effects of Lactobacillus rhamnosus GG and Bifidobacterium lactis Bb12 on beta-cell function in children with newly diagnosed T1D.Research design and methods Children aged 8–17 years with newly (within 60 days) diagnosed T1D were enrolled in a double-blind, randomised controlled trial in which they received L. rhamnosus GG and B. lactis Bb12 at a dose of 109 colony-forming units or placebo, orally, once daily, for 6 months. The follow-up was for 12 months. The primary outcome measure was the area under the curve (AUC) of the C-peptide level during 2-hour responses to a mixed meal.Results Ninety-six children were randomised (probiotics, n=48; placebo n=48; median age 12.3 years). Eighty-eight (92%) completed the 6-month intervention, and 87 (91%) completed the follow-up at 12 months. There was no significant difference between the study groups for the AUC of the C-peptide level. For the secondary outcomes at 6 months, there were no differences between the study groups. At 12 months, with one exception, there also were no significant differences between the groups. Compared with the placebo group, there was a significantly increased number of subjects with thyroid autoimmunity in the probiotic group. However, at baseline, there was also a higher frequency of thyroid autoimmunity in the probiotic group. There were no cases of severe hypoglycemia or ketoacidosis in any of the groups. No adverse events related to the study products were reported.Conclusions L. rhamnosus GG and B. lactis Bb12, as administered in this study, had no significant effect in maintaining the residual pancreatic beta-cell function in children with newly diagnosed T1D. It remains unclear which probiotics, if any, alone or in combination, are potentially the most useful for management of T1D.Trial registration number NCT03032354

New data on the continental deposits from the Cao Bang Basin (Cao Bang-Tien Yen Fault Zone, NE Vietnam) – Biostratigraphy, provenance and facies pattern

The Cao Bang Basin is the northernmost of the basins related to the Cao Bang-Tien Yen Fault Zone in northern Vietnam. The basin is filled with a thick series of continental deposits. However, the exact age of the sedimen-tary basin infill has been under discussion for a long time. Because of new published data, the authors have decided to revisit this basin. Palynological data has allowed us to assign the Cao Bang Basin infill to the Lower Oligocene PC1 complex of the Shangcun Fm. (southern China). Among the saccate grains of gymnosperms, the domination of Cathaya and Pinus was observed, whereas angiosperms are represented by Carya, Celtis, Hammamelidaceae, Ulmus and also Pterocarya, Quercus, the Castanea–Castanopsis–Lithocarpus group, and the Loranthaceae. Among pteridophytes occur Laevigatosporites, Osmundaceae, and Pteris. The sedimentolog-ical features of the Cao Bang Basin are distinct from those of other basins from the Cao Bang-Tien Yen Fault Zone. The basin is filled with a wide variety of clastic deposits, from some of coarse-grained, alluvial-fan origin, through sandy beds of fluvial origin up to fine, organic-rich lacustrine deposits. The coarse-grained lithofacies are built of clasts derived mainly from local sources. The sandstones from the basin equally are submature or immature. They contain a lot of lithoclasts, the composition of which depends on the sample location within the basin. The potential source area is composed of older sedimentary units and of granitic rocks. The geochemical samples studied reflect the geochemical composition of silicic source rocks with only a minor contribution of basic components. The succession that fills the basin is interpreted as a typical fill for relatively long-lasting evolving half-graben or strike-slip basins. Moreover, the basin is partly occupied by a subsequent present-day sedimentary basin of Quaternary age

Comparative Analysis of the Liver Transcriptome among Cattle Breeds Using RNA-seq

Global gene expression in liver transcriptome varies among cattle breeds. The present investigation was aimed to identify the differentially expressed genes (DEGs), metabolic gene networks and metabolic pathways in bovine liver transcriptome of young bulls. In this study, we comparatively analyzed the bovine liver transcriptome of dairy (Polish Holstein Friesian (HF); n = 6), beef (Hereford; n = 6), and dual purpose (Polish-Red; n = 6) cattle breeds. This study identified 895, 338, and 571 significant (p < 0.01) differentially expressed (DE) gene-transcripts represented as 745, 265, and 498 hepatic DE genes through the Polish-Red versus Hereford, Polish-HF versus Hereford, and Polish-HF versus Polish-Red breeds comparisons, respectively. By combining all breeds comparisons, 75 hepatic DE genes (p < 0.01) were identified as commonly shared among all the three breed comparisons; 70, 160, and 38 hepatic DE genes were commonly shared between the following comparisons: (i) Polish-Red versus Hereford and Polish-HF versus Hereford; (ii) Polish-Red versus Hereford and Polish-HF versus Polish-Red; and (iii) Polish-HF versus Hereford and Polish-HF versus Polish-Red, respectively. A total of 440, 82, and 225 hepatic DE genes were uniquely observed for the Polish-Red versus Hereford, Polish-HF versus Hereford, and Polish-Red versus Polish-HF comparisons, respectively. Gene ontology (GO) analysis identified top-ranked enriched GO terms (p < 0.01) including 17, 16, and 31 functional groups and 151, 61, and 140 gene functions that were DE in all three breed liver transcriptome comparisons. Gene network analysis identified several potential metabolic pathways involved in glutamine family amino-acid, triglyceride synthesis, gluconeogenesis, p38MAPK cascade regulation, cholesterol biosynthesis (Polish-Red versus Hereford); IGF-receptor signaling, catecholamine transport, lipoprotein lipase, tyrosine kinase binding receptor (Polish-HF versus Hereford), and PGF-receptor binding, (Polish-HF versus Polish-Red). Validation results showed that the relative expression values were consistent to those obtained by RNA-seq, and significantly correlated between the quantitative reverse transcription PCR (RT-qPCR) and RNA-seq (Pearson’s r  > 0.90). Our results provide new insights on bovine liver gene expressions among dairy versus dual versus beef breeds by identifying the large numbers of DEGs markers submitted to NCBI gene expression omnibus (GEO) accession number GSE114233, which can serve as useful genetic tools to develop the gene assays for trait-associated studies as well as, to effectively implement in genomics selection (GS) cattle breeding programs in Poland