AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require data management plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated and shared, so that they can be easily utilized in future analyses. AgBioData (https://www.agbiodata.org) is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development, curation and management, with the goal of creating database products that are more Findable, Accessible, Interoperable and Reusable. We strive to promote authentic, detailed, accurate and explicit communication between all parties involved in scientific data. As a step toward this goal, we present the current state of biocuration, ontologies, metadata and persistence, database platforms, programmatic (machine) access to data, communication and sustainability with regard to data curation. Each section describes challenges and opportunities for these topics, along with recommendations and best practices

Generalized Navier-Stokes equations for active suspensions

We discuss a minimal generalization of the incompressible Navier-Stokes equations to describe the complex steady-state dynamics of solvent flow in an active suspension. To account phenomenologically for the presence of an active component driving the ambient fluid flow, we postulate a generic nonlocal extension of the stress-tensor, conceptually similar to those recently introduced in granular flows. Stability and spectral properties of the resulting hydrodynamic model are studied both analytically and numerically for the two-dimensional (2D) case with periodic boundary conditions. Future generalizations of this theory could be useful for quantifying the shear properties of active suspensions