Genetic Diversity in Cultivated Sesame (Sesamum indicum L.)

Genetic diversity of traditional sesame landraces and related wild species in East Africa remains largely unexplored. Knowing what fraction of the available genetic diversity is actually used by the farmers is of central importance for understanding how cultiva- tion shapes the genetic structure of a crop and for the management of biodiversity preservation. Genetic diversity in cultivated sesame and related wild species in East Africa was determined using inter-simple sequence repeats (ISSR). Six reliable ISSR primers generated 51 amplification fragments of which 36 (70.6%) were polymorphic. The number of amplified fragments ranged from 7 to 12 with a mean of 8.5 fragments per primer. The overall gene diversity and Shannon’s index were 0.28 and 0.34, respectively. Jaccard’s similarity coefficient ranged from 0.26 to 0.96, with an average of 0.67. Forty-six accessions of sesame were divided into six clusters, although the clustering did not indicate any clear division among sesame accessions based on their origin. Each wild species was more distant from cultivated sesame than from other wild species, indicating that no cross-pollination with wild species occurred during sesame domestication. These results showed a relatively high genetic diversity in sesame and related wild species. Indian-1 and Indian-2 accessions showed a good amount of genetic divergence. The genetic diversity data uncovered in this study can be exploited to improve traditional landraces of sesame in East Africa

Molecular markers associated with aluminium tolerance in Sorghum bicolor

Background: Sorghum (Sorghum bicolor, L. Moench) production in many agro-ecologies is constrained by a variety of stresses, including high levels of aluminium (Al) commonly found in acid soils. Therefore, for such soils, growing Al tolerant cultivars is imperative for high productivity. Methods: In this study, molecular markers associated with Al tolerance were identified using a mapping population developed by crossing two contrasting genotypes for this trait. Results: Four SSR (Xtxp34, Sb5_236, Sb6_34, and Sb6_342), one STS (CTG29_3b) and three ISSR (811_1400, 835_200 and 884_200) markers produced alleles that showed significant association with Al tolerance. CTG29_3b, 811_1400, Xtxp34 and Sb5_236 are located on chromosome 3 with the first two markers located close to AltSB, a locus that underlie the Al tolerance gene (SbMATE) implying that their association with Al tolerance is due to their linkage to this gene. Although CTG29_3b and 811_1400 are located closer to AltSB, Xtxp34 and Sb5_236 explained higher phenotypic variance of Al tolerance indices. Markers 835_200, 884_200, Sb6_34 and Sb6_342 are located on different chromosomes, which implies the presence of several genes involved in Al tolerance in addition to SbMATE in sorghum. Conclusion: These molecular markers have a high potential for use in breeding for Al tolerance in sorghum. Keywords: Aluminium tolerance, Mapping population, Molecular markers, Net root length in aluminium, Sorghum bicolo

Cell membrane integrity, callose accumulation, and root growth in aluminum-stressed sorghum seedlings

Aluminum stress usually reduces plant root growth due to the accumulation of Al in specific zones of the root apex. The objectives of this study were to determine the localization of Al in the root apex of Sorghum bicolor (L.) Moech. and its effects on membrane integrity, callose accumulation, and root growth in selected cultivars. Seedlings were grown in a nutrient solution containing 0, 27, or 39 μM Al3+ for 24, 48, and 120 h. The Al stress significantly reduced root growth, especially after 48 and 120 h of exposure. A higher Al accumulation, determined by fluorescence microscopy after staining with a Morin dye, occurred in the root extension zone of the sensitive cultivar than in the tolerant cultivar. The membrane damage and callose accumulation were also higher in the sensitive than resistant cultivar. It was concluded that the Al stress significantly reduced root growth through the accumulation of Al in the root extension zone, callose accumulation, and impairment of plasma membrane integrity

Enhancing Maize Grain Yield in Acid Soils of Western Kenya Using Aluminium Tolerant Germplasm

Abstract: Maize (Zea mays L.) is one of the world’s most important cereals and is a staple food for many people in developing countries. However, in acid soils (pH < 5.5), its productivity is limited by aluminium (Al) toxicity, besides other factors. The objectives of this study were to: develop Al tolerant maize inbred lines for a maize breeding program in Kenya, develop single cross hybrids (SCHs) from some of the tolerant inbred lines and determine Al tolerance levels of the SCHs. One hundred and seventy five inbreds and 49 SCHs were developed and screened in nutrient culture containing 0 or 222 μM using Relative Net Root Growth (RNRG), hematoxylin staining (HS) and under Al saturated field conditions (44%-45.6%) at Sega and Chepkoilel. Seedling root growth was inhibited in 95% of the inbreds. F1 hybrids obtained from inbreds varying in Al tolerance, exhibited tolerance equal to or greater than that of the more tolerant parent indicating a positive transgressive inheritance to Al toxicity. Fifty eight percent of the F1 SCHs were heterotic for tolerance to Al toxicity. Al tolerance estimated by RNRG was well correlated to that of HS (r2 = 0.88, P < 0.005) but minimally correlated with the field estimates (r2 = 0.24-0.35), implying that RNRG can predict field selection under Al toxic soils by between 24% and 35%. Plant breeders should therefore employ both approaches in selecting cultivars under Al stress. This study has developed and identified Al tolerant inbreds and SCHs for use in the acid soils of Kenya and similar regions

Development of maize single cross hybrids for tolerance to low phosphorus

Low available phosphorus (P) is one of the major hindrances to maize (Zea mays L.) productivity in acid soils. The objectives of this study were to: (1) develop P-efficient maize inbred lines, (2) develop single cross hybrids from the P-efficient inbred lines, and (3) determine their response to P application in the P-deficient acid soils of western Kenya. Ninety-eight inbred lines and 49 single crosses were developed and screened at P-deficient (2.0 to 2.2 mg P/kg soil) soils of Sega and Bumala. Mean grain yield (GY) for the hybrids was 75.3% higher with P-fertilizer than without P for the same hybrids. Thirty-three percent (33%) of these hybrids were inefficient but responsive to P application, 27% were efficient and none responsive, only 13% were efficient and responsive, while the rest were inefficient and non-responsive. GY was positively correlated (r = 0.57**) with plant height (PH) and ear height (EH) (r = 0.60**) and PH was correlated with EH (r = 0.86***). This study has developed and identified P-efficient maize germplasm that can be utilized directly or in developing other hybrids for use in acid soils of western Kenya and in other acid soils where P is limiting

Phylogenetic relationship among Kenyan sorghum germplasms based on aluminium tolerance

Eighty nine (89) sorghum lines sourced from various parts of Kenya were used to determine phylogenetic relationships based on 10 DNA fragments at AltSB loci with SbMATE, ORF9 and MITE primers. Nine lines of varying aluminium tolerance levels were selected to compare their SbMATE gene expression via the real-time PCR quantification of SbMATE gene expression. The sorghum line MSCR O2 expressed a thousandfold more SbMATEgene activity than the sensitive lines (MSCRM49, MSCRN84 and MSCRN61) under Al treatment. Analysis was done by agarose gel electrophoresis stained with ethidium bromide. The objective of this study was to assess the level of phylogenetic relationships among the Kenyan sorghum germplasms at a known Al tolerance locus. Hierarchical cluster analysis joined at 70% simple matching coefficient using average linkage similarity level produced nine groups in which 67 lines fell in three major clusters of 39, 15 and 13 lines each. The three Al tolerant lines MSCRO2, MSCRC1 and MSCRN60 were clustered together. Lines MSCRO2, MSCRC1 and MSCRN60, screened to be Al tolerant were genetically related at 70% average linkage similarity level and therefore recommend their further development as a food security measure in Kenya.Keywords: Aluminium (Al) toxicity, Sorghum bicolor, Sorghum bicolor multi-drug, toxic extrusion compound (SbMATE) gene expressionAfrican Journal of Biotechnology Vol. 12(22), pp. 3528-353

Appropriateness of clinical severity classification of new WHO childhood pneumonia guidance : a multi-hospital, retrospective, cohort study

Background: Management of pneumonia in many low-income and middle-income countries is based on WHO guidelines that classify children according to clinical signs that define thresholds of risk. We aimed to establish whether some children categorised as eligible for outpatient treatment might have a risk of death warranting their treatment in hospital. Methods: We did a retrospective cohort study of children aged 2–59 months admitted to one of 14 hospitals in Kenya with pneumonia between March 1, 2014, and Feb 29, 2016, before revised WHO pneumonia guidelines were adopted in the country. We modelled associations with inpatient mortality using logistic regression and calculated absolute risks of mortality for presenting clinical features among children who would, as part of revised WHO pneumonia guidelines, be eligible for outpatient treatment (non-severe pneumonia). Findings: We assessed 16 162 children who were admitted to hospital in this period. 832 (5%) of 16 031 children died. Among groups defined according to new WHO guidelines, 321 (3%) of 11 788 patients with non-severe pneumonia died compared with 488 (14%) of 3434 patients with severe pneumonia. Three characteristics were strongly associated with death of children retrospectively classified as having non-severe pneumonia: severe pallor (adjusted risk ratio 5·9, 95% CI 5·1–6·8), mild to moderate pallor (3·4, 3·0–3·8), and weight-for-age Z score (WAZ) less than −3 SD (3·8, 3·4–4·3). Additional factors that were independently associated with death were: WAZ less than −2 to −3 SD, age younger than 12 months, lower chest wall indrawing, respiratory rate of 70 breaths per min or more, female sex, admission to hospital in a malaria endemic region, moderate dehydration, and an axillary temperature of 39°C or more. Interpretation: In settings of high mortality, WAZ less than −3 SD or any degree of pallor among children with non-severe pneumonia was associated with a clinically important risk of death. Our data suggest that admission to hospital should not be denied to children with these signs and we urge clinicians to consider these risk factors in addition to WHO criteria in their decision making

Civil society leadership in the struggle for AIDS treatment in South Africa and Uganda

Includes abstract.Includes bibliographical references.This thesis is an attempt to theorise and operationalise empirically the notion of ‘civil society leadership’ in Sub-Saharan Africa. ‘AIDS leadership,’ which is associated with the intergovernmental institutions charged with coordinating the global response to HIV/AIDS, is both under-theorised and highly context-specific. In this study I therefore opt for an inclusive framework that draws on a range of approaches, including the literature on ‘leadership’, institutions, social movements and the ‘network’ perspective on civil society mobilisation. This framework is employed in rich and detailed empirical descriptions (‘thick description’) of civil society mobilisation around AIDS, including contentious AIDS activism, in the key case studies of South Africa and Uganda. South Africa and Uganda are widely considered key examples of poor and good leadership (from national political leaders) respectively, while the Treatment Action Campaign (TAC) and The AIDS Support Organisation (TASO) are both seen as highly effective civil society movements. These descriptions emphasise ‘transnational networks of influence’ in which civil society leaders participated (and at times actively constructed) in order to mobilise both symbolic and material resources aimed at exerting influence at the transnational, national and local levels

Genetic improvement of oil quality in sesame (Sesamum indicum L.)

Sesame (Sesamum indicum L.) seed is source of high quality edible oil for which the market niche can be expanded by developing cultivars with altered fatty acid composition through conventional breeding or genetic transformation. There is need to know the natural diversity in oil quality to facilitate breeding, while reliable regeneration and transformation protocols need to be developed for genetic engineering. The seed oil diversity in thirty sesame accessions from East Africa over three years, and the regeneration and floral transformation potential of selected accessions were studied. The effectiveness of a cloned sesame oleate desaturase was tested in Arabidopsis thaliana. Significant variation was observed among the accessions for the oil content and the quantity of individual fatty acids in each of the three years of field evaluation. There was positive correlation between oil content and stearic and oleic acid levels. Shoot regeneration was achieved from cotyledon explants, whereas hypocotyl explants only gave callus and roots. Some accessions were more amenable to regeneration than others. A high rate of sesame transformation using Agrobacterium tumefaciens carrying a binary vector containing the neomycin phosphotransferase (NPT) II gene for kanamycin resistance and the enhanced green fluorescent protein (EGFP) reporter gene was achieved through floral dipping, pollen infiltration and suspension drop. Pollen infiltration and suspension drop produced higher transformation frequencies than floral dip. Agrobacterium strains EHA 105 and GV3101 gave higher transformation than GV2260. The best sesame cultivars for transformation were Mtwara-2 and McBlack. A Δ12 oleate desaturase cDNA isolated from immature seeds had its function confirmed by its complementation of the fad2-2 mutant phenotype of A. thaliana. The cDNA was also expressed in transgenic A. thaliana lines that synthesize epoxy, hydroxy and acetylenic fatty acids, and shown to influence the accumulation of linoleic and the unusual fatty acids. The major contribution of this study is the development of novel regeneration and transformation techniques for sesame, which open new avenues for the genetic improvement of the crop