On signalling over through-silicon via (TSV) interconnects in 3-D integrated circuits.

This paper discusses signal integrity (SI) issues and signalling techniques for Through Silicon Via (TSV) interconnects in 3-D Integrated Circuits (ICs). Field-solver extracted parasitics of TSVs have been employed in Spice simulations to investigate the effect of each parasitic component on performance metrics such as delay and crosstalk and identify a reduced-order electrical model that captures all relevant effects. We show that in dense TSV structures voltage-mode (VM) signalling does not lend itself to achieving high data-rates, and that current-mode (CM) signalling is more effective for high throughput signalling as well as jitter reduction. Data rates, energy consumption and coupled noise for the different signalling modes are extracted

Bacteria mediated silver nanoparticles: comparison as potent antibiofilm agents

Introduction: Biosynthesized silver nanoparticles (AgNPs) have good antimicrobial properties comparable to chemically synthesized silver nanoparticles. Further, they have good potential as antibiofilm agents.Methods: AgNPs were synthesized from Pseudomonas aeruginosa (ATCC 27853), Escherichia coli (ATCC 25922), Staphylococcus aureus (ATCC 25923) and Acinetobacter baumannii (confirmed clinical isolate) and physically characterized by several techniques. The antibiofilm activity of the AgNPs against biofilms of P. aeruginosa, S. aureus and C. albicans was studied using crystal violet assay. Biofilms were formed in 96-well polystyrene plates and treated with biosynthesized AgNPs for 24 and 48 h.Results: AgNPs synthesized by all bacteria except S. aureus mediated AgNPs displayed 50% biofilm inhibition at AgNP concentrations between 1.98 - 0.225 mg/ml. S. aureus mediated AgNPs showed 50% biofilm inhibition only against S. aureus biofilm. Scanning Electron microscopic images indicated that biosynthesized AgNPs were able to decrease surface coverage of biofilms and to reduce the extracellular matrix causing morphological changes in biofilms noticeably.Conclusion: This study reports the antibiofilm activity of bacteria mediated AgNPs. This is the first report on antibiofilm activity of AgNPs synthesized by Acinetobacter baumannii and also as a comparison of antibiofilm activity of several bacteria mediated AgNPs. According to the results, low dosages of green AgNPs can be applied in treating drug-resistant microbial infections in a cost effective manner. In conclusion, the bacterial synthesized AgNPs have antibiofilm activity and good stability suggesting its usefulness as economic and environmental friendly antibiofilm agents.</p

Development and validation of a reference marker for identification of aerobic and anaerobic bacteria associated with diabetes chronic wound ulcers using PCR denaturing gradient gel electrophoresis

Introduction: Diabetes chronic wounds consist with a diverse microbial community and unculturablespecies may be highly prevalent.Objectives: This study aimed to establish a bacterial reference marker consisting of a group ofchronic wound related bacteria, using polymerase chain reaction-denaturing gradient gelelectrophoresis (PCR-DGGE) for profiling of bacteria in diabetes chronic wound infections.Methods: DNA was extracted from the known wound bacterial strains. PCR–DGGE was performedusing eubacterial specific primers targeting V2-V3 region of 16S rDNA. DGGE was performed usinga 30-55% denaturing gradient. Migration position of each organism was detected on DGGE gel andimportant organisms were selected. Equal volume from PCR products of each selected organism wasmixed, diluted with gel loading dye in 1:1.5 ratio and used for all DGGE gels. The ladder was thensubjected to species identification of fifteen tissue debridement specimens obtained from diabeteschronic wound ulcers. The identification efficacy was tested by sequencing.Results: DNA of bacterial pathogens which showed different migration distances on the gel werecombined and used as a reference panel. This bacterial ladder consisted of eleven different bacterialspecies including Bacteroides sp., S. aureus, Acineto bacter sp., P. aeruginosa, Streptococcus Group Aand Group B sp., E. faecalis, Providencia sp., Veillonella sp., E .coli and Enterobacter sp. Accordingto the reference panel, Pseudomonas species were abundant. Further the results were confirmed bysequencing.Conclusion: Reference marker allows comparative analysis of DGGE patterns and can be used as atool for presumptive identification of polymicrobial microbiota in chronic wound infections

Organophosphorous pesticide breakdown products in house dust and children’s urine.

Human exposure to preformed dialkylphosphates (DAPs) in food or the environment may affect the reliability of DAP urinary metabolites as biomarkers of organophosphate (OP) pesticide exposure. We conducted a study to investigate the presence of DAPs in indoor residential environments and their association with children’s urinary DAP levels. We collected dust samples from homes in farmworker and urban communities (40 homes total, n=79 samples) and up to two urine samples from resident children ages 3-6 years. We measured six DAPs in all samples and eight DAP-devolving OP pesticides in a subset of dust samples (n=54). DAPs were detected in dust with diethylphosphate (DEP) being the most frequently detected (>=60%); detection frequencies for other DAPs were 0.05). Detection of DEP, chlorpyrifos, or diazinon, was not associated with DEP and/or DEPþdiethylthiophosphate detection in urine (Kappa coefficients=-0.33 to 0.16). Finally, estimated nondietary ingestion intake from DEP in dust was found to be <=5% of the dose calculated from DEP levels in urine, suggesting that ingestion of dust is not a significant source of DAPs in urine if they are excreted unchanged.This work was supported by EPA (RD 83171001) and NIEHS (PO1 ES009605). Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the EPA, NIEHS, or other funders. Additional support was provided by an EPA STAR Doctoral Fellowship (F5D30812), the University of California Institute for Mexico and the United States (UC MEXUS), and the Center for Latino Policy Research at the University of California at Berkeley

Influence of culture medium on in-vitro biofilm formation by Candida species

Objectives: Objective of this study was to establish an in vitro biofilm on the 96 well plates and to determine the efficacy of three different culture media on biofilm formation of Candida albicans and C. tropicalis Methods: A 96 well sterile, polystyrene plate was inoculated using 10^6 cell/ml of C. albicans and C. tropicalis suspensions and the growth rate of planktonic cells was determined by measuring the absorbance (OD492) at 2 hour intervals. Adhesion of Candidial cells to initiate the biofilm formation in the presence of three culture media (Yeast Nitrogen Base (YNB) supplemented with 100 mM glucose, Sabouraud Dextrose Broth (SDB) and RPMI1640) was quantified using MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) and Crystal Violet (CV) assay after 90 minutes. Biofilms of C. albicans, C. tropicalis and 1:1 co-biofilms were developed and the growth rates were quantified at 24 hours’ time intervals. Scanning electron microscope (SEM) was performed to assess the architecture. Results: Planktonic cells of both C. albicans and C. tropicalis showed maximum growth with SDB. C. albicans and co-biofilm adhesion were significantly facilitated with RPMI1640 and the best medium for C. tropicalis adhesion was YNB. Biofilms showed the maximum growth rate in RPMI 1640. C. tropicalis exhibited the minimum growth with all three culture media.Conclusions: The maximum growth rate for planktonic C. albicans and C. tropicalis was achieved with SDB. However RPMI 1640 was the best medium for growth of biofilms

The pandemic brain: Neuroinflammation in non-infected individuals during the COVID-19 pandemic

While COVID-19 research has seen an explosion in the literature, the impact of pandemic-related societal and lifestyle disruptions on brain health among the uninfected remains underexplored. However, a global increase in the prevalence of fatigue, brain fog, depression and other “sickness behavior”-like symptoms implicates a possible dysregulation in neuroimmune mechanisms even among those never infected by the virus. We compared fifty-seven ‘Pre-Pandemic’ and fifteen ‘Pandemic’ datasets from individuals originally enrolled as control subjects for various completed, or ongoing, research studies available in our records, with a confirmed negative test for SARS-CoV-2 antibodies. We used a combination of multimodal molecular brain imaging (simultaneous positron emission tomography / magnetic resonance spectroscopy), behavioral measurements, imaging transcriptomics and serum testing to uncover links between pandemic-related stressors and neuroinflammation. Healthy individuals examined after the enforcement of 2020 lockdown/stay-at-home measures demonstrated elevated brain levels of two independent neuroinflammatory markers (the 18 kDa translocator protein, TSPO, and myoinositol) compared to pre-lockdown subjects. The serum levels of two inflammatory markers (interleukin-16 and monocyte chemoattractant protein-1) were also elevated, although these effects did not reach statistical significance after correcting for multiple comparisons. Subjects endorsing higher symptom burden showed higher TSPO signal in the hippocampus (mood alteration, mental fatigue), intraparietal sulcus and precuneus (physical fatigue), compared to those reporting little/no symptoms. Post-lockdown TSPO signal changes were spatially aligned with the constitutive expression of several genes involved in immune/neuroimmune functions. This work implicates neuroimmune activation as a possible mechanism underlying the non-virally-mediated symptoms experienced by many during the COVID-19 pandemic. Future studies will be needed to corroborate and further interpret these preliminary findings

Farmers’ occupational health, perception and practices towards leptospirosis: A cause for concern

Introduction: Leptospirosis is a neglected zoonotic disease with a global distribution. Exposure to Leptospira is a major occupational health concern with farmers. Lack of awareness of disease can result in delay in seeking medical care which has serious implications on morbidity and mortality. This study aimed to assess knowledge, attitudes and practices (KAP) towards leptospirosis among farmers in the district of Colombo, Sri Lanka.Methods: The study was a descriptive, cross sectional study conducted among farmers in the district of Colombo, Sri Lanka. Data was collected using a pre-tested interviewer-administered questionnaire to assess the KAP of 120 randomly selected farmers in the Homagama, Padukka, Boralesgamuwa and Kotte Medical Officer of Health (MOH) areas.Results: The majority of respondents were in the 50-74 year age group and 85% were male. The majority of participants had reasonable knowledge (74%) of the method of transmission, symptoms, complications and preventive measures of leptospirosis, which was occupationally related to farming. Satisfactory attitudes towards disease prevention was demonstrated by 92.5% and 53.3% had favorable practices.Conclusion: The results of the study imply that knowledge of leptospirosis among the farming community can be improved further. This in turn may help to translate toward better attitudes and practices.</p

Human stomach microbiota: Effects on health and disease

The gut microbiota is a complex ecological community, consisting of trillions of microbes which include bacteria, viruses, fungi and protozoa. The stomach was previously considered as a sterile site uninhabited by microbes due to its hostile environmental conditions. Breaking this concept, Helicobacter pylori was the first pathogen reported to inhabit the stomach. Recent studies have suggested that the stomach harbours transient as well as certain commensal bacterial and fungal species. The five major microbial phyla in the stomach have been identified as Firmicutes, Bacteroidetes, Actinobacteria, Fusobacteria and Proteobacteria. The composition of gastric microbiota is dynamic and is affected by several factors.  These include age group, dietary habits, medication use, inflammation of gastric mucosa and H. pylori colonization.  Further, the role of host genetics has recently been studied in maintaining the stomach microbiota. Mutations in host genes may affect the host’s immune response towards commensal bacteria and reduce their number and diversity. The essential multiple roles of gut microorganisms include maintaining homeostasis in the gut, contributing to immune function and extraction of nutrients and energy from our diets.  Loss of the normal balance between the gut microbiota and host has been associated with several abnormal conditions and disorders such as obesity, malnutrition, inflammatory bowel diseases (IBD), neurological disorders, and cancer. In the stomach, the interaction between H. pylori and the gastric microbiota can also influence gastric dis­ease progression. Further studies should focus on addressing the role of gastric dysbiosis in health and disease. Identifying gastric microbiota is essential to understand how the gut microbiota and H. pylori affect health and disease.</p

TiO2 21 nm nanoparticles as a photocatalytic antimicrobial agent against Escherichia coli, Candida albicans and Methicillin resistant Staphylococcus aureus: A comparison

 Objectives: To determine and compare the antimicrobial activity of 21 nm TiO2 nanoparticles against Escherichia colii, Candida albicans and Methicillin resistant Staphylococcus aureus (MRSA).Methods: Titanium dioxide (TiO2) 21 nm anatase nanoparticles (13.9 g/l) were suspended in miliQ (MQ) water, sonicated (35 MHz for 1 hour) and autoclaved. Sterile glass petriplates were treated with TiO2 suspension or sterile MQ(control). Overnight cultures of E.coli MRSA and C. albicans were added to TiO2 coated plates and control plates and kept at room temperature.   Viable counts were obtained by spread plate method at 0 hours and 24 hours; before and after sunlight exposure for 30 minutes.  Colony forming units (CFU) / ml was calculated to determine percentage reduction of CFU in presence of TiO2. Experiments were done in triplicates.Results: TiO2 nanoparticles demonstrated antimicrobial activity against E.coli, MRSA and C. albicans. Estimated percentage CFU reduction in E.coli (13±8.4), MRSA (12±6.6) and C. albicans (36±4.9 ) was observed at 0 hours of contact in the supernatant. The bactericidal effect was enhanced on exposure of the plates to sunlight. Estimated percentage CFU reductions are E. coli (46±7.9), MRSA (99±0.2 ) and C. albicans (99±0.4). The results for 24 hours were (95±1 ), (35±2.1 ) and (83±4 ) reduction for E. coli, MRSA and C. albicans respectively. When the 24 hour plates were exposed to sunlight (99±0.6), (99±0.6) and (99±0.2) reduction was seen for E.coli, MRSA and C. albicans respectively. Conclusion: Anatase 21 nm TiO2 nanoparticles show enhanced antimicrobial activity against the tested microbial strains following photoactivation by sunlight.  Antimicrobial activity against three different types of microbial strains has varying effects