Digital multiplexed mRNA analysis of functionally important genes in single human oocytes and correlation of changes in transcript levels with oocyte protein expression

Objective To investigate functionally important transcripts in single human oocytes with the use of NanoString technology and determine whether observed differences are biologically meaningful. Design Analysis of human oocytes with the use of NanoString and immunoblotting. Setting University-affiliated reproductive medicine unit. Patients Women undergoing in vitro fertilization. Intervention Human oocytes were analyzed with the use of NanoString or immunoblotting. Main Outcome Measures The abundance of transcripts for ten functionally important genes—AURKA, AURKC, BUB1, BUB1B (encoding BubR1), CDK1, CHEK1, FYN, MOS, MAP2K1, and WEE2—and six functionally dispensable genes were analyzed with the use of NanoString. BubR1 protein levels in oocytes from younger and older women were compared with the use of immunoblotting. Result(s) All ten functional genes but none of the six dispensable genes were detectable with the use of NanoString in single oocytes. There was 3- to 5-fold variation in BUB1, BUB1B, and CDK1 transcript abundance among individual oocytes from a single patient. Transcripts for these three genes—all players within the spindle assembly checkpoint surveillance mechanism for preventing aneuploidy—were reduced in the same oocyte from an older patient. Mean BUB1B transcripts were reduced by 1.5-fold with aging and associated with marked reductions in BubR1 protein levels. Conclusion(s) The abundance of functionally important transcripts exhibit marked oocyte-to-oocyte heterogeneity to a degree that is sufficient to affect protein expression. Observed variations in transcript abundance are therefore likely to be biologically meaningful, especially if multiple genes within the same pathway are simultaneously affected

Cereal Leaf Beetle (Coleoptera: Chrysomelidae) Influence of Seeding Rate of Oats on Populations

In field and greenhouse studies, more cereal leaf beetle [Oulema melanopus (Lin- naeus)] eggs and larvae were found per unit area on spring oats, Avena sativa L., planted either at intermediate (54 kg/ha) or high (136 kg/ha) seeding rates, than when planted at a lower seeding rate (14 kg/ha). However, there were fewer eggs and larvae per stem in plantings of the high or intermediate rates than in those of the lower rate. Oats should not be planted at less than the recommended rates in beetle-infested areas

Characterization of the complications associated with plasma exchange for thrombotic thrombocytopaenic purpura and related thrombotic microangiopathic anaemias: a single institution experience.

Plasma exchange (PEX) is a life-saving therapeutic procedure in patients with thrombotic thrombocytopaenic purpura (TTP) and other thrombotic microangiopathic anaemias (TMAs). However, it may be associated with significant complications, exacerbating the morbidity and mortality in this patient group

Polarization-controlled single photons

Vacuum-stimulated Raman transitions are driven between two magnetic substates of a rubidium-87 atom strongly coupled to an optical cavity. A magnetic field lifts the degeneracy of these states, and the atom is alternately exposed to laser pulses of two different frequencies. This produces a stream of single photons with alternating circular polarization in a predetermined spatio-temporal mode. MHz repetition rates are possible as no recycling of the atom between photon generations is required. Photon indistinguishability is tested by time-resolved two-photon interference.Comment: 4 pages, 3 figure

Appearance of Half-Metallicity in the Quaternary Heusler Alloys

I report systematic first-principle calculations of the quaternary Heusler alloys like Co$_2$[Cr$_{1-x}$Mn$_x$]Al, Co$_2$Mn[Al$_{1-x}$Sn$_x$] and [Fe$_{1-x}$Co$_x$]$_2$MnAl. I show that when the two limiting cases (x=0 or 1) correspond to a half-metallic compound, so do the intermediate cases. Moreover the total spin moment $M_t$ in $\mu_B$ scales linearly with the total number of valence electrons $Z_t$ (and thus with the concentration $x$) following the relation $M_t=Z_t-24$, independently of the origin of the extra valence electrons, confirming the Slater-Pauling behavior of the normal Heusler alloys. Finally I discuss in all cases the trends in the atomic projected DOSs and in the atomic spin moments.Comment: 4 pages, 3 figures, 2 Table

Circuit QED with a Flux Qubit Strongly Coupled to a Coplanar Transmission Line Resonator

We propose a scheme for circuit quantum electrodynamics with a superconducting flux-qubit coupled to a high-Q coplanar resonator. Assuming realistic circuit parameters we predict that it is possible to reach the strong coupling regime. Routes to metrological applications, such as single photon generation and quantum non-demolition measurements are discussed.Comment: 8 pages, 5 figure

Cereal Leaf Beetle (Coleoptera: Chrysomelidae) Influence of Seeding Rate of Oats on Populations

In field and greenhouse studies, more cereal leaf beetle [Oulema melanopus (Lin- naeus)] eggs and larvae were found per unit area on spring oats, Avena sativa L., planted either at intermediate (54 kg/ha) or high (136 kg/ha) seeding rates, than when planted at a lower seeding rate (14 kg/ha). However, there were fewer eggs and larvae per stem in plantings of the high or intermediate rates than in those of the lower rate. Oats should not be planted at less than the recommended rates in beetle-infested areas

Scalable simultaneous multi-qubit readout with 99.99% single-shot fidelity

We describe single-shot readout of a trapped-ion multi-qubit register using space and time-resolved camera detection. For a single qubit we measure 0.9(3)x10^{-4} readout error in 400us exposure time, limited by the qubit's decay lifetime. For a four-qubit register (a "qunybble") we measure an additional error of only 0.1(1)x10^{-4} per qubit, despite the presence of 4% optical cross-talk between neighbouring qubits. A study of the cross-talk indicates that the method would scale with negligible loss of fidelity to ~10000 qubits at a density <~1 qubit/um^2, with a readout time ~1us/qubit.Comment: 4 pages, 3 figures; simulations added to fig.3, with some further text and figure revisions. Main results unchanged

Correlation in the transition metal based Heusler compounds Co2_2MnSi and Co2_2FeSi

Half-metallic ferromagnets like the full Heusler compounds with formula X$_2$YZ are supposed to show an integer value of the spin magnetic moment. Calculations reveal in certain cases of X = Co based compounds non-integer values, in contrast to experiments. In order to explain deviations of the magnetic moment calculated for such compounds, the dependency of the electronic structure on the lattice parameter was studied theoretically. In local density approximation (LDA), the minimum total energy of Co$_2$FeSi is found for the experimental lattice parameter, but the calculated magnetic moment is about 12% too low. Half-metallic ferromagnetism and a magnetic moment equal to the experimental value of $6\mu_B$ are found, however, only after increasing the lattice parameter by more than 6%. To overcome this discrepancy, the LDA$+U$ scheme was used to respect on-site electron correlation in the calculations. Those calculations revealed for Co$_2$FeSi that an effective Coulomb-exchange interaction $U_{eff}=U-J$ in the range of about 2eV to 5eV leads to half-metallic ferromagnetism and the measured, integer magnetic moment at the measured lattice parameter. Finally, it is shown in the case of Co$_2$MnSi that correlation may also serve to destroy the half-metallic behavior if it becomes too strong (for Co$_2$MnSi above 2eV and for Co$_2$FeSi above 5eV). These findings indicate that on-site correlation may play an important role in the description of Heusler compounds with localized moments.Comment: submitted to Phys. Rev.

Population Genetic Structuring in Opisthorchis viverrini over Various Spatial Scales in Thailand and Lao PDR

Khon Kaen Province in northeast Thailand is known as a hot spot for opisthorchiasis in Southeast Asia. Preliminary allozyme and mitochondrial DNA haplotype data from within one endemic district in this Province (Ban Phai), indicated substantial genetic variability within Opisthorchis viverrini. Here, we used microsatellite DNA analyses to examine the genetic diversity and population structure of O. viverrini from four geographically close localities in Khon Kaen Province. Genotyping based on 12 microsatellite loci yielded a mean number of alleles per locus that ranged from 2.83 to 3.7 with an expected heterozygosity in Hardy-Weinberg equilibrium of 0.44-0.56. Assessment of population structure by pairwise F(ST) analysis showed inter-population differentiation (P<0.05) which indicates population substructuring between these localities. Unique alleles were found in three of four localities with the highest number observed per locality being three. Our results highlight the existence of genetic diversity and population substructuring in O. viverrini over a small spatial scale which is similar to that found at a larger scale. This provides the basis for the investigation of the role of parasite genetic diversity and differentiation in transmission dynamics and control of O. viverrini