Conditional Gene Editing in Presynaptic Extinction-ensemble Cells via the CRISPR-SaCas9 System

The CRISPR-Cas9 enables efficient gene editing in various cell types, including post-mitotic neurons. However, neuronal ensembles in the same brain region can still be functionally or anatomically different, and such heterogeneity requires gene editing in specific neuronal populations. We recently developed a CRISPR-SaCas9 system-based technique. Combined with activity-dependent cell-labeling methods and anterograde/retrograde adeno-associated virus (AAV) vectors, this technique achieves function- and projection-specific gene editing in the mammalian brain. We showed that perturbing cbp (CREB-binding protein) in extinction-ensemble neurons among amygdala-projecting infralimbic cortex (IL) cells impaired fear extinction learning, demonstrating the high efficiency in regulation of extinction learning with CRISPR-Cas9. Here, we describe a detailed protocol of gene perturbation in presynaptic extinction-ensemble neurons in adult rats, including gRNA design, gRNA evaluation in vitro, stereotaxic AAV injection, and contextual fear conditioning. The high specificity and efficiency of projection- and function-specific CRISPR-SaCas9 system can be widely applied in neural circuitry studies

Fractional quantum Hall effect at ν=5/2\nu = 5/2: Ground states, non-Abelian quasiholes, and edge modes in a microscopic model

We present a comprehensive numerical study of a microscopic model of the fractional quantum Hall system at filling fraction $\nu = 5/2$, based on the disc geometry. Our model includes Coulomb interaction and a semi-realistic confining potential. We also mix in some three-body interaction in some cases to help elucidate the physics. We obtain a phase diagram, discuss the conditions under which the ground state can be described by the Moore-Read state, and study its competition with neighboring stripe phases. We also study quasihole excitations and edge excitations in the Moore-Read--like state. From the evolution of edge spectrum, we obtain the velocities of the charge and neutral edge modes, which turn out to be very different. This separation of velocities is a source of decoherence for a non-Abelian quasihole/quasiparticle (with charge $\pm e/4$) when propagating at the edge; using numbers obtained from a specific set of parameters we estimate the decoherence length to be around four microns. This sets an upper bound for the separation of the two point contacts in a double point contact interferometer, designed to detect the non-Abelian nature of such quasiparticles. We also find a state that is a potential candidate for the recently proposed anti-Pfaffian state. We find the speculated anti-Pfaffian state is favored in weak confinement (smooth edge) while the Moore-Read Pfaffian state is favored in strong confinement (sharp edge).Comment: 15 pages, 9 figures; Estimate of e/4 quasiparticle/hole coherence length when propagating along the edge modified in response to a recent revision of Ref. 25, and minor changes elsewher

Phase Diagram Of The Biham-Middleton-Levine Traffic Model In Three Dimensions

We study numerically the behavior of the Biham-Middleton-Levine traffic model in three dimensions. Our extensive numerical simulations show that the phase diagram for this model in three dimensions is markedly different from that in one and two dimensions. In addition to the full speed moving as well as the completely jamming phases, whose respective average asymptotic car speeds $$ equal one and zero, we observe an extensive region of car densities $\rho$ with a low but non-zero average asymptotic car speed. The transition from this extensive low average asymptotic car speed region to the completely jamming region is at least second order. We argue that this low speed region is a result of the formation of a spatially-limited-extended percolating cluster. Thus, this low speed phase is present in $n > 3$ dimensional Biham-Middleton-Levine model as well.Comment: Minor clarifications, 1 figure adde

Energy transfer, pressure tensor and heating of kinetic plasma

Kinetic plasma turbulence cascade spans multiple scales ranging from macroscopic fluid flow to sub-electron scales. Mechanisms that dissipate large scale energy, terminate the inertial range cascade and convert kinetic energy into heat are hotly debated. Here we revisit these puzzles using fully kinetic simulation. By performing scale-dependent spatial filtering on the Vlasov equation, we extract information at prescribed scales and introduce several energy transfer functions. This approach allows highly inhomogeneous energy cascade to be quantified as it proceeds down to kinetic scales. The pressure work, $-\left( \boldsymbol{P} \cdot \nabla \right) \cdot \boldsymbol{u}$, can trigger a channel of the energy conversion between fluid flow and random motions, which is a collision-free generalization of the viscous dissipation in collisional fluid. Both the energy transfer and the pressure work are strongly correlated with velocity gradients.Comment: 28 pages, 10 figure

Damage-free single-mode transmission of deep-UV light in hollow-core PCF

Transmission of UV light with high beam quality and pointing stability is desirable for many experiments in atomic, molecular and optical physics. In particular, laser cooling and coherent manipulation of trapped ions with transitions in the UV require stable, single-mode light delivery. Transmitting even ~2 mW CW light at 280 nm through silica solid-core fibers has previously been found to cause transmission degradation after just a few hours due to optical damage. We show that photonic crystal fiber of the kagom\'e type can be used for effectively single-mode transmission with acceptable loss and bending sensitivity. No transmission degradation was observed even after >100 hours of operation with 15 mW CW input power. In addition it is shown that implementation of the fiber in a trapped ion experiment significantly increases the coherence times of the internal state transfer due to an increase in beam pointing stability

Classification of Overlapped Audio Events Based on AT, PLSA, and the Combination of Them

Audio event classification, as an important part of Computational Auditory Scene Analysis, has attracted much attention. Currently, the classification technology is mature enough to classify isolated audio events accurately, but for overlapped audio events, it performs much worse. While in real life, most audio documents would have certain percentage of overlaps, and so the overlap classification problem is an important part of audio classification. Nowadays, the work on overlapped audio event classification is still scarce, and most existing overlap classification systems can only recognize one audio event for an overlap. In this paper, in order to deal with overlaps, we innovatively introduce the author-topic (AT) model which was first proposed for text analysis into audio classification, and innovatively combine it with PLSA (Probabilistic Latent Semantic Analysis). We propose 4 systems, i.e. AT, PLSA, AT-PLSA and PLSA-AT, to classify overlaps. The 4 proposed systems have the ability to recognize two or more audio events for an overlap. The experimental results show that the 4 systems perform well in classifying overlapped audio events, whether it is the overlap in training set or the overlap out of training set. Also they perform well in classifying isolated audio events