Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Access to hematopoietic stem cell transplantation among pediatric patients with acute lymphoblastic leukemia: a population-based analysis

Access to hematopoietic stem cell transplantation (HSCT) in pediatric acute lymphoblastic leukemia (ALL) primarily depends on disease-related factors but may be influenced by social and economic determinants. We included all children aged = 50,000 x 10(9)/L (OR, 1.58; 95% CI, 1.09 to 2.28), mixed phenotype acute leukemia relative to B-precursor ALL (OR, 34.32; 95% CI, 16.64 to 70.79), T cell relative to B-precursor ALL (OR, 1.77; 95% CI, 1.07 to 2.91), unfavorable relative to standard cytogenetics (OR, 3.96; 95% CI, 2.56 to 6.12), and relapse before HSCT (OR, 32.77; 95%, 23.89 to 44.96). No association was found between race, neighborhood income quintile or region at diagnosis, and receipt of HSCT. Diagnosis at an HSCT treating center (OR, 1.51; 95% CI, 1.09 to 2.09) and residential distance from the ALL treating center (OR, 1.84 for >= 300 km compared wit

Water Use, Growth, and Yield of Ratooned Guayule under Subsurface Drip and Furrow Irrigation in the US Southwest Desert

Guayule (Parthenium argentatum, A. Gray) is a perennial desert shrub with ratoon-cropping potential for multiple harvests of its natural rubber, resin, and bagasse byproducts. However, yield expectations, water use requirements, and irrigation scheduling information for ratooned guayule are extremely limited. The objectives of this study were to evaluate dry biomass (DB), contents of rubber (R) and resin (Re) and yields of rubber (RY) and resin (ReY) responses to irrigation treatments, and develop irrigation management criteria for ratooned guayule. The water productivity (WP) of the yield components were also evaluated. Guayule plants that were direct-seeded in April 2018 were ratooned and regrown starting in April 2020, after an initial 2-year harvest at two locations in Arizona: Maricopa and Eloy on sandy loam and clay soils, respectively. Plots were irrigated with subsurface drip irrigation (SDI) at 50, 75, and 100% replacement of crop evapotranspiration (ETc), respectively, and furrow irrigation at 100% ETc replacement, as determined by soil water balance measurements. The Eloy location did not include the 100% irrigation treatment under SDI due to unsuccessful regrowth for this specific treatment. The irrigation treatments at the locations were replicated three times in a randomized complete block design. After 21–22 months of regrowth, the guayule plants were harvested in plots. The results showed that DB increased with the amount of total water applied (TWA, irrigation plus precipitation), while R and Re were reduced at the highest TWA received at both locations. Ultimately, the SDI treatments with 75% ETc replacement resulted in the best irrigation management in terms of maximizing RY and ReY, and WP for both locations and soil types. Compared to the initial 2-year direct-seeded guayule crop, ratooned guayule required less TWA and attained higher DB, RY, and ReY, as well as higher WP, with average increases of 25% in dry biomass, 33% in rubber yield, and 32% in resin yield. A grower’s costs for planting the initial direct-seeded guayule crop would be offset by the additional yield revenue of the ratooned crop, which would have comparatively small startup costs