Visualization of Crystallographic Defects in InSb Micropillars by Ptychographic Topography

International audienceInvestigation of the strain field and defects in crystalline materials is essential in materials characterization, fabrication and design, as they are responsible for distinct mechanical, electric and magnetic properties of a desired material. Therefore, the visualization of strain and its relation to the type and density of defects in the crystal at the nanoscale is required. A domain in which such questions are particularly relevant is the fabrication of nanodevices for microelectronics from semiconductors, such as InSb, that are used as fast transistors, detectors and sensors. Classically, transmission electron microscopy (TEM) provides imaging of the crystalline defects with atomic spatial resolution, but due to the thin sections requirement, sample preparation is invasive and can modify the strain fields to be analyzed. A conventional tool to non-invasively study strain is Laue X-ray micro-diffraction [1], which reveals the strain field in crystalline samples averaged over the direction of the beam propagation with a resolution limited by the beam size. X-ray topography (XRT) [2] has been routinely used for imaging defects based on the diffraction contrast, with the resolution being restricted by the detector pixel size. X-ray coherence methods, such as coherent diffraction imaging (CDI) and ptychography, which are based on measuring the sample's far-field diffraction patterns and using phase retrieval algorithms, permit obtaining high resolution images. If the measurements are performed close to a Bragg peak, the resulting image becomes highly sensitive to the presence of strain [3, 4]. We have recently developed ptychographic topography, in which a crystalline sample is rotated with respect to the incident beam such that a certain atomic plane is in the Bragg condition, as shown in Fig. 1a [5]. A pinhole is then placed after the sample in the forward direction and is spatially translated, providing the sufficient overlapping necessary for ptychographic reconstructions [6]. The diffraction patterns are recorded at each pinhole position with a 2D detector downstream of the pinhole and used simultaneously for the reconstruction of the wave front at the pinhole position. So far measurements were performed in forward direction due to the limited space at the beamline to fulfil the ptychographic detector sampling requirement along the Bragg-diffracted beam direction. Numerical backpropagation then enables one to obtain an image of the sample, which is sensitive to the lattice displacements caused by defects

Imaging ultrafast dynamical diffraction wavefronts in strained Si with coherent X-rays

Dynamical diffraction effects in single crystals produce highly monochromatic parallel X-ray beams with a mutual separation of a few micrometer and a time-delay of a few fs -the so-called echoes. This ultrafast diffraction effect is used at X-ray Free Electron Lasers in self-seeding schemes to improve beam monochromaticity. Here, we present a coherent X-ray imaging measurement of echoes from Si crystals and demonstrate that a small surface strain can be used to tune their temporal delay. These results represent a first step towards the ambitious goal of strain-tailoring new X-ray optics

Analysis of Lymphocytic DNA Damage in Early Multiple Sclerosis by Automated Gamma-H2AX and 53BP1 Foci Detection: A Case Control Study

Background In response to DNA double-strand breaks, the histone protein H2AX becomes phosphorylated at its C-terminal serine 139 residue, referred to as γ-H2AX. Formation of γ-H2AX foci is associated with recruitment of p53-binding protein 1 (53BP1), a regulator of the cellular response to DNA double-strand breaks. γ-H2AX expression in peripheral blood mononuclear cells (PBMCs) was recently proposed as a diagnostic and disease activity marker for multiple sclerosis (MS). Objective To evaluate the significance of γ-H2AX and 53BP1 foci in PBMCs as diagnostic and disease activity markers in patients with clinically isolated syndrome (CIS) and early relapsing-remitting MS (RRMS) using automated γ-H2AX and 53BP1 foci detection. Methods Immunocytochemistry was performed on freshly isolated PBMCs of patients with CIS/early RRMS (n = 25) and healthy controls (n = 27) with γ-H2AX and 53BP1 specific antibodies. Nuclear γ-H2AX and 53BP1 foci were determined using a fully automated reading system, assessing the numbers of γ-H2AX and 53BP1 foci per total number of cells and the percentage of cells with foci. Patients underwent contrast enhanced 3 Tesla magnetic resonance imaging (MRI) and clinical examination including expanded disability status scale (EDSS) score. γ-H2AX and 53BP1 were also compared in previously frozen PBMCs of each 10 CIS/early RRMS patients with and without contrast enhancing lesions (CEL) and 10 healthy controls. Results The median (range) number of γ-H2AX (0.04 [0–0.5]) and 53BP1 (0.005 [0–0.2]) foci per cell in freshly isolated PBMCs across all study participants was low and similar to previously reported values of healthy individuals. For both, γ-H2AX and 53BP1, the cellular focus number as well as the percentage of positive cells did not differ between patients with CIS/RRMS and healthy controls. γ-H2AX and 53BP1 levels neither correlated with number nor volume of T2-weighted lesions on MRI, nor with the EDSS. Although γ-H2AX, but not 53BP1, levels were higher in previously frozen PBMCs of patients with than without CEL, γ-H2AX values of both groups overlapped and γ-H2AX did not correlate with the number or volume of CEL. Conclusion γ-H2AX and 53BP1 foci do not seem to be promising diagnostic or disease activity biomarkers in patients with early MS. Lymphocytic DNA double-strand breaks are unlikely to play a major role in the pathophysiology of MS

Mechanical adaptation of brachiopod shells via hydration-induced structural changes.

The function-optimized properties of biominerals arise from the hierarchical organization of primary building blocks. Alteration of properties in response to environmental stresses generally involves time-intensive processes of resorption and reprecipitation of mineral in the underlying organic scaffold. Here, we report that the load-bearing shells of the brachiopod Discinisca tenuis are an exception to this process. These shells can dynamically modulate their mechanical properties in response to a change in environment, switching from hard and stiff when dry to malleable when hydrated within minutes. Using ptychographic X-ray tomography, electron microscopy and spectroscopy, we describe their hierarchical structure and composition as a function of hydration to understand the structural motifs that generate this adaptability. Key is a complementary set of structural modifications, starting with the swelling of an organic matrix on the micron level via nanocrystal reorganization and ending in an intercalation process on the molecular level in response to hydration

X-ray Fourier ptychography

To a large extent, the performance of imaging systems is determined by their objectives, which affect properties as varied as collection efficiency, resolving power, and image distortions. Such limitations can be addressed by so-called aperture synthesis, a technique used, for instance, in radar, astronomy, and, increasingly, microscopy. Here, we apply such techniques to x-ray imaging and demonstrate how Fourier ptychography can be used at transmission x-ray microscopes to increase resolution, provide quantitative absorption and phase contrast, and allow for corrections of lens aberrations. We anticipate that such methods will find common and frequent applications, alleviating a number of limitations imposed by x-ray optical elements, offering an alternative approach to phase contrast imaging, and providing novel opportunities to mitigate radiation damage.ISSN:2375-254

High-acceptance versatile microfocus module based on elliptical Fresnel zone plates for small-angle X-ray scattering

High-efficiency microfocusing of multi-keV X-rays at synchrotron sources is highly profitable for spatially resolved structural analysis of many kinds. Because radiation from synchrotron sources is typically elongated along the horizontal dimension, generating a microbeam that is isotropic in size requires a carefully designed optics system. Here we report on using a combination of a horizontally tunable slit downstream of the undulator source with elliptical diffractive Fresnel zone plates. We demonstrate the arrangement in context of small-angle X-ray scattering experiments, obtaining a microbeam of 2.2 μm ×1.8 μm (X × Y) with a flux of 1.2 × 1010 photons/s at an energy of 11.2 keV at the sample position