Electric Field Standing Wave Effects in FT-IR Transflection Spectra of biological tissue sections: simulated models of experimental variability

The so-called electric field standing wave effect (EFSW) has recently been demonstrated to significantly distort FT-IR spectra acquired in a transflection mode, both experimentally and in simulated models, bringing into question the appropriateness of the technique for sample characterization, particularly in the field of spectroscopy of biological materials. The predicted effects are most notable in the regime where the sample thickness is comparable to the source wavelength. In this work, the model is extended to sample thicknesses more representative of biological tissue sections and to include typical experimental factors which are demonstrated to reduce the predicted effects. These include integration over the range of incidence angles, varying degrees of coherence of the source and inhomogeneities in sample thickness. The latter was found to have the strongest effect on the spectral distortions and, with inhomogeneities as low as 10% of the sample thickness, the predicted distortions due to the standing wave effect are almost completely averaged out. As the majority of samples for biospectroscopy are prepared by cutting a cross section of tissue resulting in a high degree of thickness variation, this finding suggests that the standing wave effect should be a minor distortion in FT-IR spectroscopy of tissues. The study has important implications not only in optimization of protocols for future studies, but notably for the validity of the extensive studies which have been performed to date on tissue samples in the transflection geometry

Electric field standing wave effects in FT-IR transflection spectra of biological tissue sections : simulated models of experimental variability

The so-called electric field standing wave effect (EFSW) has recently been demonstrated to significantly distort FT-IR spectra acquired in a transflection mode, both experimentally and in simulated models, bringing into question the appropriateness of the technique for sample characterization, particularly in the field of spectroscopy of biological materials. The predicted effects are most notable in the regime where the sample thickness is comparable to the source wavelength. In this work, the model is extended to sample thicknesses more representative of biological tissue sections and to include typical experimental factors which are demonstrated to reduce the predicted effects. These include integration over the range of incidence angles, varying degrees of coherence of the source and inhomogeneities in sample thickness. The latter was found to have the strongest effect on the spectral distortions and, with inhomogeneities as low as 10% of the sample thickness, the predicted distortions due to the standing wave effect are almost completely averaged out. As the majority of samples for biospectroscopy are prepared by cutting a cross section of tissue resulting in a high degree of thickness variation, this finding suggests that the standing wave effect should be a minor distortion in FT-IR spectroscopy of tissues. The study has important implications not only in optimization of protocols for future studies, but notably for the validity of the extensive studies which have been performed to date on tissue samples in the transflection geometry

Suspended-core optical fibres for organic dye absorption spectroscopy

In this paper, we report on our study of UV-VIS absorption spectroscopy in suspended-core optical fibres (SCFs) filled with organic-dye solutions. We compare two different dye classes, the anionic dye - bromophenol blue sodium salt (BB) and cationic dye - oxazine 725 perchlorate (OX). While the results obtained with BB are in a good agreement with the spectra measured in a standard reference cuvette, those obtained with OX are different and reveal much stronger absorption of light than in cuvettes. This stronger absorption indicates accumulation of the dye molecules on the short section of the core close to the end of the fibre. This observation demonstrates difference in physicochemical properties of the two dye classes and is important for the development of chemical sensors based on SCFs