Discrete elastic model for stretching-induced flagellar polymorphs

Force-induced reversible transformations between coiled and normal polymorphs of bacterial flagella have been observed in recent optical-tweezer experiment. We introduce a discrete elastic rod model with two competing helical states governed by a fluctuating spin-like variable that represents the underlying conformational states of flagellin monomers. Using hybrid Brownian dynamics Monte-Carlo simulations, we show that a helix undergoes shape transitions dominated by domain wall nucleation and motion in response to externally applied uniaxial tension. A scaling argument for the critical force is presented in good agreement with experimental and simulation results. Stretching rate-dependent elasticity including a buckling instability are found, also consistent with the experiment

Stretching helical nano-springs at finite temperature

Using dynamic simulations and analytic methods, we study the elastic response of a helical filament subject to uniaxial tension over a wide range of bend and twist persistence length. A low-pitch helix at low temperatures exhibits a stretching instability and the force-extension curve consists of a sequence of spikes. At elevated temperature (i.e. small persistence lengths) the helix melts and a pronounced force plateau is obtained in the fixed-extension ensemble. The torque boundary condition significantly affects the resulting elastic properties

Non-equilibrium hydrodynamics of a rotating filament

The nonlinear dynamics of an elastic filament that is forced to rotate at its base is studied by hydrodynamic simulation techniques; coupling between stretch, bend, twist elasticity and thermal fluctuations is included. The twirling-overwhirling transition is located and found to be strongly discontinuous. For finite bend and twist persistence length, thermal fluctuations lower the threshold rotational frequency, for infinite persistence length the threshold agrees with previous analytical predictions

Instabilities and turbulence-like dynamics in an oppositely driven binary particle mixture

Using extensive particle-based simulations, we investigate out-of-equilibrium pattern dynamics in an oppositely driven binary particle system in two dimensions. A surprisingly rich dynamical behavior including lane formation, jamming, oscillation and turbulence-like dynamics is found. The ratio of two friction coefficients is a key parameter governing the stability of lane formation. When the friction coefficient transverse to the external force direction is sufficiently small compared to the longitudinal one, the lane structure becomes unstable to shear-induced disturbances, and the system eventually exhibits a dynamical transition into a novel turbulence-like phase characterized by random convective flows. We numerically construct an out-of-equilibrium phase diagram. Statistical analysis of complex spatio-temporal dynamics of the fully nonlinear turbulence-like phase suggests its apparent reminiscence to the swarming dynamics in certain active matter systems.Comment: 6 pages, 6 figures, accepted for publication in EP