SIMPATIQCO: A server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on orbitrap instruments

While the performance of liquid chromatography (LC) and mass spectrometry (MS) instrumentation continues to increase, applications such as analyses of complete or near-complete proteomes and quantitative studies require constant and optimal system performance. For this reason, research laboratories and core facilities alike are recommended to implement quality control (QC) measures as part of their routine workflows. Many laboratories perform sporadic quality control checks. However, successive and systematic longitudinal monitoring of system performance would be facilitated by dedicated automatic or semiautomatic software solutions that aid an effortless analysis and display of QC metrics over time. We present the software package SIMPATIQCO (SIMPle AuTomatIc Quality COntrol) designed for evaluation of data from LTQ Orbitrap, Q-Exactive, LTQ FT, and LTQ instruments. A centralized SIMPATIQCO server can process QC data from multiple instruments. The software calculates QC metrics supervising every step of data acquisition from LC and electrospray to MS. For each QC metric the software learns the range indicating adequate system performance from the uploaded data using robust statistics. Results are stored in a database and can be displayed in a comfortable manner from any computer in the laboratory via a web browser. QC data can be monitored for individual LC runs as well as plotted over time. SIMPATIQCO thus assists the longitudinal monitoring of important QC metrics such as peptide elution times, peak widths, intensities, total ion current (TIC) as well as sensitivity, and overall LC-MS system performance; in this way the software also helps identify potential problems. The SIMPATIQCO software package is available free of charge

On-site and in situ remediation technologies applicable to petroleum hydrocarbon contaminated sites in the Antarctic and Arctic

Petroleum hydrocarbon contaminated sites, associated with the contemporary and legacy effects of human activities, remain a serious environmental problem in the Antarctic and Arctic. The management of contaminated sites in these regions is often confounded by the logistical, environmental, legislative and financial challenges associated with operating in polar environments. In response to the need for efficient and safe methods for managing contaminated sites, several technologies have been adapted for on-site or in situ application in these regions. This article reviews six technologies which are currently being adapted or developed for the remediation of petroleum hydrocarbon contaminated sites in the Antarctic and Arctic. Bioremediation, landfarming, biopiles, phytoremediation, electrokinetic remediation and permeable reactive barriers are reviewed and discussed with respect to their advantages, limitations and potential for the long-term management of soil and groundwater contaminated with petroleum hydrocarbons in the Antarctic and Arctic. Although these technologies demonstrate potential for application in the Antarctic and Arctic, their effectiveness is dependent on site-specific factors including terrain, soil moisture and temperature, freeze–thaw processes and the indigenous microbial population. The importance of detailed site assessment prior to on-site or in situ implementation is emphasized, and it is argued that coupling of technologies represents one strategy for effective, long-term management of petroleum hydrocarbon contaminated sites in the Antarctic and Arctic