Genomic ancestry estimation quantifies use of wild species in grape breeding

BACKGROUND: Grapes are one of the world’s most valuable crops and most are made into wine. Grapes belong to the genus Vitis, which includes over 60 inter-fertile species. The most common grape cultivars derive their entire ancestry from the species Vitis vinifera, but wild relatives have also been exploited to create hybrid cultivars, often with increased disease resistance. RESULTS: We evaluate the genetic ancestry of some of the most widely grown commercial hybrids from North America and Europe. Using genotyping-by-sequencing (GBS), we generated 2482 SNPs and 56 indels from 7 wild Vitis, 7 V. vinifera, and 64 hybrid cultivars. We used a principal component analysis (PCA) based ancestry estimation procedure and verified its accuracy with both empirical and simulated data. V. vinifera ancestry ranged from 11 % to 76 % across hybrids studied. Approximately one third (22/64) of the hybrids have ancestry estimates consistent with F1 hybridization: they derive half of their ancestry from wild Vitis and half from V. vinifera. CONCLUSIONS: Our results suggest that hybrid grape breeding is in its infancy. The distribution of V. vinifera ancestry across hybrids also suggests that backcrosses to wild Vitis species have been more frequent than backcrosses to V. vinifera during hybrid grape breeding. This pattern is unusual in crop breeding, as it is most common to repeatedly backcross to elite, or domesticated, germplasm. We anticipate our method can be extended to facilitate marker-assisted selection in order to introgress beneficial wild Vitis traits, while allowing for offspring with the highest V. vinifera content to be selected at the seedling stage. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-016-2834-8) contains supplementary material, which is available to authorized users

Highly-efficient, frequency-tripled Nd:YAG laser for spaceborne LIDARs

For a spaceborne lidar a highly reliable, long living and efficient laser source is absolutely essential. Within the frame of the development of a laser source for the backscatter lidar ATLID, which will be flown on EarthCare mission, we setup and tested a predevelopment model of an injection-seeded, diode pumped, frequency tripled, pulsed high power Nd:YAG MOPA laser operating nominally at 100 Hz pulse repetition frequency. We also tested the burst operation mode. The excellent measured performance parameter will be introduced. The oscillator rod is longitudinally pumped from both sides. The oscillator has been operated with three cavity control methods: "Cavity Dither", "Pound-Drever-Hall" and "Adaptive Ramp & Fire". Especially the latter method is very suitable to operate the laser in harsh vibrating environment such in airplanes. The amplifier bases on the InnoSlab design concept. The constant keeping of a moderate fluence in the InnoSlab crystal permits excellent possibilities to scale the pulse energy to several 100 mJ. An innovative pump unit and optics makes the laser performance insensitive to inhomogeneous diode degradation and allows switching of additional redundant diodes. Further key features have been implemented in a FM design concept. The operational lifetime is extended by the implementation of internal redundancies for the most critical parts. The reliability is increased due to the higher margin onto the laser induced damage threshold by a pressurized housing. Additionally air-to-vacuum effects becomes obsolete. A high efficient heat removal concept has been implemented